RLG00000009006

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005896
Physical Location & Seq
Forward (+)
44660422 .. 44660940
519 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009006

Sequence Viewer

Length: 351 bp
ATGCTGGGTCACCGGAAAGAAGTGAATCCGGATAAAGTCCGAGCATCCCCGTCGACAATGATGCTAACGAACGGTGTTATTGTAAACGAGAAGCTACATTGGGTAATTGAGGACTACAATCTCGGGTTTGATAACGAGGAGGATCCTATTGTTGTCTTTGATTTGGAGATGGAGGAGTTTCGGAAACTGCGGCTTCCGTTTCCTAAGGTTGAAGGAGATGACAGTGTGAATTTCAGTGTTGCGGTTTTTTGCAGTGAAGGGTGTCTGTGTCTATGGCATTATGGAAGTTTTGCTGCCTCTGGTTCTGTTGATTTTTGGGTCATGGAAAGGTATGGAGACAATGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

4.48

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 2 cut(s) 190, 242
AclWI GGATC 2 cut(s) 137, 150
AcsI RAATTY 1 cut(s) 229
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 137, 150
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 204
BamHI GGATCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 346
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 163
BcgI CGANNNNNNTGC 4 cut(s) 33, 43, 67, 77
BcoDI GTCTC 1 cut(s) 330
BisI GCNGC 2 cut(s) 191, 294
BlsI GCNGC 2 cut(s) 192, 295
BmeT110I CYCGRG 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 2 cut(s) 51, 53
BsaWI WCCGGW 2 cut(s) 12, 28
Bse21I CCTNAGG 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 28
BseGI GGATG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 152, 188
BseXI GCAGC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 13, 29
BsmAI GTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 2 cut(s) 190, 242
BspEI TCCGGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 137, 150
BssMI GATC 1 cut(s) 142
BssSI CACGAG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 74, 224
BstDEI CTNAG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 142
BstPI GGTNACC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 229, 241, 259
CviAII CATG 1 cut(s) 322
CviJI RGCY 2 cut(s) 94, 193
CviKI_1 RGCY 2 cut(s) 94, 193
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 122
Eco91I GGTNACC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 8
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 274, 282, 323, 333
FatI CATG 1 cut(s) 321
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 191, 294
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 191, 294
GluI GCNGC 2 cut(s) 191, 294
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 2 cut(s) 13, 29
Hin1II CATG 1 cut(s) 325
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 25, 344
HpaII CCGG 2 cut(s) 13, 29
Hpy166II GTNNAC 2 cut(s) 54, 85
Hpy188I TCNGA 2 cut(s) 41, 183
Hpy188III TCNNGA 2 cut(s) 29, 348
Hpy8I GTNNAC 2 cut(s) 54, 85
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 206, 251
HpyCH4III ACNGT 2 cut(s) 74, 224
HpyCH4V TGCA 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 26, 42, 285
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 51, 53
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 105, 229
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 5 cut(s) 103, 130, 133, 166, 307
MroI TCCGGA 1 cut(s) 28
MspI CCGG 2 cut(s) 13, 29
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 192, 295
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 142
SalI GTCGAC 1 cut(s) 52
SatI GCNGC 2 cut(s) 191, 294
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 338
SetI ASST 3 cut(s) 96, 210, 332
SfaNI GCATC 2 cut(s) 51, 53
Sse9I AATT 2 cut(s) 105, 229
SsiI CCGC 2 cut(s) 190, 242
TaaI ACNGT 2 cut(s) 74, 224
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 105, 229
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 3 cut(s) 229, 241, 259
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 3 cut(s) 229, 241, 259
XapI RAATTY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.