RchiOBHm_Chr2g0109111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005896
Physical Location & Seq
Forward (+)
20493938 .. 20498085
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48296

Sequence Viewer

Length: 759 bp
ATGATAATTGTTACAAATGAATTGGGAAATGAAACTAGAAATTGGAAATTAGAGAAGACTATAAAGAGCCTCATCGATCAGCACCGTAGCCACTACACACTCCTGTCGACTTCCCCAAATCACCTCAGAGAGAGAGAGAGAGAGAGCGGCAATTGCAATGTCGGACTTCATCCCCGACGAGATGATCCTCCAAATTTTCGAGAAGCTGCCGGTGAAGGCATTATCACGATCCAAGCTAGTTTCCAAACGCTGGAAGAAGCTCATATCCCACTCCAAATTCGCCCAATCCCACTTCGAATCGGCCCATATGAACCAAACCCTAACCCGCTCACTCCTCCTCTCAGTCTCCACCAAAACCCCCCAGCCCGAATCCCTAGAATTGGACCGGCTTCGCTTCGGAGACCGTACGTACTGGAGGCTACCGGAGACTACGAACTCATCCAGCTGTCCGCTAATTATGGTGTTATTGTAAACGAGAAGCTGCATTGGGTGATTGAGGACTACAATCTCGAGTTTGATGAGGAGGAGGACCCTATTGTTGCTTTTGATTTGGAGTCGGAGGAGTTTCGGAGACTGCGGCTTCCGTTTCCTAAGTACGTGAAGGGTGTCTGTGTCCGTGGCGTTATGGAAGGCTTGCTGCTTCTGGCTCTGTTGCTTTTTGGGTCATGGAAAGGTATGAAGACAATGACTCGTGGAACATGCGCTATAGCTTTAGGATTTCCAATGAGACTCCGATTAAGTTTCTCAAGCCACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.75

Weight (kDa)

6.46

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 250
AccBSI CCGCTC 2 cut(s) 147, 328
AccI GTMKAC 1 cut(s) 107
AciI CCGC 4 cut(s) 147, 326, 450, 577
AclWI GGATC 2 cut(s) 179, 223
AcsI RAATTY 2 cut(s) 193, 276
AfaI GTAC 3 cut(s) 407, 411, 596
AfiI CCNNNNNNNGG 2 cut(s) 250, 380
AluBI AGCT 6 cut(s) 206, 236, 260, 445, 481, 710
AluI AGCT 6 cut(s) 206, 236, 260, 445, 481, 710
Alw26I GTCTC 5 cut(s) 350, 394, 420, 565, 721
AlwI GGATC 2 cut(s) 179, 223
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 206, 481, 637
ApoI RAATTY 2 cut(s) 193, 276
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 3 cut(s) 302, 383, 529
AsuHPI GGTGA 3 cut(s) 113, 224, 502
AsuII TTCGAA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 383, 529
BauI CACGAG 1 cut(s) 690
BbsI GAAGAC 2 cut(s) 62, 686
BbvI GCAGC 3 cut(s) 193, 468, 624
BcoDI GTCTC 5 cut(s) 350, 394, 420, 565, 721
BfaI CTAG 3 cut(s) 36, 237, 375
BfmI CTRYAG 1 cut(s) 705
BisI GCNGC 5 cut(s) 148, 207, 482, 578, 638
BlsI GCNGC 5 cut(s) 149, 208, 483, 579, 639
Bme18I GGWCC 2 cut(s) 383, 529
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 3 cut(s) 302, 383, 529
BmiI GGNNCC 1 cut(s) 531
BpiI GAAGAC 2 cut(s) 62, 686
BpmI CTGGAG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 730
Bsa29I ATCGAT 1 cut(s) 75
BsaAI YACGTR 2 cut(s) 409, 598
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 616
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 380
Bse118I RCCGGY 2 cut(s) 209, 385
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 169, 438
BseLI CCNNNNNNNGG 2 cut(s) 250, 380
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 139, 355
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 5 cut(s) 324, 327, 536, 539, 575
BseXI GCAGC 3 cut(s) 193, 468, 624
BseYI CCCAGC 1 cut(s) 361
BshFI GGCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 3 cut(s) 210, 386, 423
BsiWI CGTACG 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 250, 380
BsmAI GTCTC 5 cut(s) 350, 394, 420, 565, 721
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 509
Bsp119I TTCGAA 1 cut(s) 295
Bsp143I GATC 3 cut(s) 76, 184, 228
BspACI CCGC 4 cut(s) 147, 326, 450, 577
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 138, 354
BspDI ATCGAT 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 2 cut(s) 179, 223
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 394
BsrBI CCGCTC 2 cut(s) 147, 328
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 2 cut(s) 209, 385
BsrI ACTGG 1 cut(s) 417
BssAI RCCGGY 2 cut(s) 209, 385
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 3 cut(s) 76, 184, 228
BssSI CACGAG 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 86, 405
BstBAI YACGTR 2 cut(s) 409, 598
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 3 cut(s) 125, 341, 591
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 169, 438
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 3 cut(s) 79, 187, 231
BstMAI GTCTC 5 cut(s) 350, 394, 420, 565, 721
BstMBI GATC 3 cut(s) 76, 184, 228
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 705
BstSNI TACGTA 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 193, 468, 624
BstV2I GAAGAC 2 cut(s) 62, 686
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 2 cut(s) 169, 438
Cac8I GCNNGC 1 cut(s) 635
CfoI GCGC 1 cut(s) 704
Cfr10I RCCGGY 2 cut(s) 209, 385
Cfr13I GGNCC 3 cut(s) 302, 383, 529
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 3 cut(s) 406, 410, 595
CviAII CATG 2 cut(s) 666, 699
CviQI GTAC 3 cut(s) 406, 410, 595
DdeI CTNAG 3 cut(s) 125, 341, 591
DpnI GATC 3 cut(s) 78, 186, 230
DpnII GATC 3 cut(s) 76, 184, 228
Eco105I TACGTA 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 394
Eco47I GGWCC 2 cut(s) 383, 529
Eco88I CYCGRG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 529
FaeI CATG 2 cut(s) 669, 702
FatI CATG 2 cut(s) 665, 698
FauI CCCGC 1 cut(s) 333
FauNDI CATATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 5 cut(s) 148, 207, 482, 578, 638
FokI GGATG 2 cut(s) 156, 425
Fsp4HI GCNGC 5 cut(s) 148, 207, 482, 578, 638
FspBI CTAG 3 cut(s) 36, 237, 375
GlaI GCGC 1 cut(s) 703
GluI GCNGC 5 cut(s) 148, 207, 482, 578, 638
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 303
HapII CCGG 3 cut(s) 210, 386, 423
HhaI GCGC 1 cut(s) 704
Hin1II CATG 2 cut(s) 669, 702
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 5 cut(s) 297, 369, 554, 688, 729
HpaII CCGG 3 cut(s) 210, 386, 423
HphI GGTGA 3 cut(s) 113, 224, 502
Hpy166II GTNNAC 2 cut(s) 108, 472
Hpy188I TCNGA 6 cut(s) 128, 164, 399, 559, 570, 734
Hpy188III TCNNGA 3 cut(s) 200, 226, 509
Hpy8I GTNNAC 2 cut(s) 108, 472
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 209, 595, 623
HpyCH4III ACNGT 2 cut(s) 86, 405
HpyCH4IV ACGT 2 cut(s) 408, 597
HpyCH4V TGCA 2 cut(s) 156, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 3 cut(s) 125, 341, 591
HpySE526I ACGT 2 cut(s) 408, 597
Hsp92II CATG 2 cut(s) 669, 702
HspAI GCGC 1 cut(s) 702
Kzo9I GATC 3 cut(s) 76, 184, 228
LpnPI CCDG 9 cut(s) 116, 223, 236, 375, 398, 399, 436, 455, 629
Lsp1109I GCAGC 3 cut(s) 193, 468, 624
MaeI CTAG 3 cut(s) 36, 237, 375
MaeII ACGT 2 cut(s) 408, 597
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 78, 186, 230
MbiI CCGCTC 2 cut(s) 147, 328
MboI GATC 3 cut(s) 76, 184, 228
MboII GAAGA 3 cut(s) 67, 266, 691
MfeI CAATTG 1 cut(s) 151
MluCI AATT 9 cut(s) 6, 20, 40, 47, 151, 193, 276, 378, 454
MlyI GAGTC 3 cut(s) 563, 682, 723
MmeI TCCRAC 2 cut(s) 142, 537
MseI TTAA 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 3 cut(s) 210, 386, 423
MunI CAATTG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeI CATATG 1 cut(s) 307
NdeII GATC 3 cut(s) 76, 184, 228
NlaIII CATG 2 cut(s) 669, 702
NlaIV GGNNCC 1 cut(s) 531
NspI RCATGY 1 cut(s) 702
NspV TTCGAA 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 509
PfeI GAWTC 2 cut(s) 297, 369
Pfl23II CGTACG 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 5 cut(s) 149, 208, 483, 579, 639
PleI GAGTC 3 cut(s) 562, 682, 723
PpsI GAGTC 3 cut(s) 562, 682, 723
Ppu21I YACGTR 2 cut(s) 409, 598
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 361
PspLI CGTACG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 3 cut(s) 302, 383, 529
PspPPI RGGWCCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 3 cut(s) 407, 411, 596
RsaNI GTAC 3 cut(s) 406, 410, 595
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 5 cut(s) 148, 207, 482, 578, 638
Sau3AI GATC 3 cut(s) 76, 184, 228
Sau96I GGNCC 3 cut(s) 302, 383, 529
SchI GAGTC 3 cut(s) 563, 682, 723
SfcI CTRYAG 1 cut(s) 705
Sfr274I CTCGAG 1 cut(s) 509
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 2 cut(s) 383, 529
SlaI CTCGAG 1 cut(s) 509
SmlI CTYRAG 2 cut(s) 509, 745
SmoI CTYRAG 2 cut(s) 509, 745
SnaBI TACGTA 1 cut(s) 409
Sse9I AATT 9 cut(s) 6, 20, 40, 47, 151, 193, 276, 378, 454
SsiI CCGC 4 cut(s) 147, 326, 450, 577
SspMI CTAG 3 cut(s) 36, 237, 375
TaaI ACNGT 2 cut(s) 86, 405
TaiI ACGT 2 cut(s) 411, 600
TaqI TCGA 5 cut(s) 75, 107, 199, 295, 510
TasI AATT 9 cut(s) 6, 20, 40, 47, 151, 193, 276, 378, 454
TauI GCSGC 2 cut(s) 150, 580
TfiI GAWTC 2 cut(s) 297, 369
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TseI GCWGC 3 cut(s) 206, 481, 637
TspDTI ATGAA 5 cut(s) 33, 45, 158, 324, 692
TspGWI ACGGA 2 cut(s) 573, 605
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 383, 529
XapI RAATTY 2 cut(s) 193, 276
XceI RCATGY 1 cut(s) 702
XhoI CTCGAG 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 3 cut(s) 36, 237, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.