RLG00000021316

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005896
Physical Location & Seq
Forward (+)
74080186 .. 74080704
519 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021316

Sequence Viewer

Length: 414 bp
ATGCTGGGTCACCGGAAAGAAGTGAATCCGGATAAAGTCCGAGCATCCCCTTCGACAATGATGCTAACGAACGGTGGGCAAGAGGTGTTGTTCTGCACTGATGCTATGCAGGGGGATTTGAGGAGTTGGTATCAAGGTGTTATTGTAAACGAGAAGCTACATTGGGTAATTGAGGACTACAATCTCGGGTTTGATAACGAGGAGGATCCTATTGTTGTCTTTGATTTGGAGATGGAGGAGTTTCGGAAACTGCGGCTTCCGTTTCCTAAGGTTGAAGGAGATGACAGTGTGAATTTCAGTGTTGCGGTTTTTTGCAGTGAAGGGTGTCTGTGTCTATGGCATTATGGAAGTTTTGCTGCCTCTGGTTCTGTTGATTTTTGGGTCATGGAAAGGTATGGAGACAATGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

138

Amino Acids

15.66

Weight (kDa)

4.41

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 43 - 135 2.6e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 2 cut(s) 253, 305
AclWI GGATC 2 cut(s) 200, 213
AcsI RAATTY 1 cut(s) 292
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 2 cut(s) 200, 213
Ama87I CYCGRG 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 267
BamHI GGATCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 409
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 226
BcgI CGANNNNNNTGC 4 cut(s) 33, 43, 67, 77
BcoDI GTCTC 1 cut(s) 393
BisI GCNGC 2 cut(s) 254, 357
BlsI GCNGC 2 cut(s) 255, 358
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 3 cut(s) 51, 53, 91
BsaWI WCCGGW 2 cut(s) 12, 28
Bse21I CCTNAGG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 28
BseGI GGATG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 136, 215, 251
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 13, 29
BsmAI GTCTC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 2 cut(s) 253, 305
BspEI TCCGGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 200, 213
BssMI GATC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 409
Bst2BI CACGAG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 74, 287
BstDEI CTNAG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 4 cut(s) 96, 292, 304, 322
CviAII CATG 1 cut(s) 385
CviJI RGCY 2 cut(s) 157, 256
CviKI_1 RGCY 2 cut(s) 157, 256
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 185
Eco91I GGTNACC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 8
FaeI CATG 1 cut(s) 388
FaiI YATR 5 cut(s) 107, 337, 345, 386, 396
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 254, 357
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 254, 357
GluI GCNGC 2 cut(s) 254, 357
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 2 cut(s) 13, 29
Hin1II CATG 1 cut(s) 388
HinfI GANTC 2 cut(s) 25, 407
HpaII CCGG 2 cut(s) 13, 29
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 41, 246
Hpy188III TCNNGA 2 cut(s) 29, 411
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 60, 269, 314
HpyCH4III ACNGT 2 cut(s) 74, 287
HpyCH4V TGCA 3 cut(s) 96, 109, 315
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 26, 42, 95, 348
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 3 cut(s) 51, 53, 91
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MflI RGATCY 1 cut(s) 205
MluCI AATT 2 cut(s) 168, 292
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 7 cut(s) 76, 114, 166, 193, 196, 229, 370
MroI TCCGGA 1 cut(s) 28
MspI CCGG 2 cut(s) 13, 29
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 255, 358
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PspEI GGTNACC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 205
SatI GCNGC 2 cut(s) 254, 357
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 1 cut(s) 401
SetI ASST 5 cut(s) 87, 139, 159, 273, 395
SfaNI GCATC 3 cut(s) 51, 53, 91
Sse9I AATT 2 cut(s) 168, 292
SsiI CCGC 2 cut(s) 253, 305
TaaI ACNGT 2 cut(s) 74, 287
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 168, 292
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 4 cut(s) 103, 292, 304, 322
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 4 cut(s) 103, 292, 304, 322
XapI RAATTY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.