RLG00000033851

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005896
Physical Location & Seq
Forward (+)
32979126 .. 32980122
997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033851

Sequence Viewer

Length: 789 bp
ATGGCCGTGGTGGGGATGGGCCAGGCTTTGCTAGCGGCTTATGGTCTTCCTTTAGAGACCTTATTTCGCTGTAAAGCTAGCGTCCCCTTTAACTCGACCCGACTGCGACACCTTGCTATTGGGCTCCAACTTCCGGTGAATGACGTTTCTACCAAAAGGAAGATCGGTAATAAAGCAAGGGGAGAAACACAATGCTGGGGTCGTTGGAAAGAAGTGAATTCGGATAAAGTCCGAGCATCCTCGTCGACAATGATGCTGATGAACGGTGGGCAAGAGGTGTTGTTCTGCACTGATGCTACGCTGGGGGATTTAAGGAGCGTTATTGTAAATGAGAAGTTGCACTGGGTAATTGAAGACTACAATCTCAAGTTTGATGACGAGGAGGATCCTATTGTTGTCTTTGATTTGGAGATGGAGGAGTTTCGGAGACTGCGGTTTCTGTTTCCTAAGGTTGAAGGAGATGACAGTGTGAATTTCAGTGTTGCGGTTTTTTACAGTGAAGGGTGTCTGTGTCTATGGCATTATGGAAGTCTTGCTGCCTCTGGTTCTGTTGATTTTTGGGTCATGGAAAGGTATGGAGACAATGACTCGTGGAACATGCTTTATAGTTTTAGGATTTCCAACGAGTCTCCAATTAAGTTTCTGAAGCCACTTGTAGTTGCAGAGAGCAATCAAGTTCTTATGAGATGTTCTACTGCTGCAGAGCTGGAGTTGGTAAGGATTCGTGGACAAGAAGAGGAGGAGTGTGGTACCTATATGAATGAGGTCGAGCAAATGTTATGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

263

Amino Acids

29.87

Weight (kDa)

4.89

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 102 - 245 1.4e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 749
AccI GTMKAC 1 cut(s) 245
AciI CCGC 3 cut(s) 35, 433, 485
AclWI GGATC 2 cut(s) 380, 393
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 217, 472
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 1 cut(s) 751
AfiI CCNNNNNNNGG 2 cut(s) 12, 133
AgsI TTSAA 2 cut(s) 353, 455
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 77, 706
AluI AGCT 2 cut(s) 77, 706
Alw26I GTCTC 4 cut(s) 50, 421, 573, 633
AlwI GGATC 2 cut(s) 380, 393
AoxI GGCC 2 cut(s) 3, 19
ApeKI GCWGC 2 cut(s) 536, 698
ApoI RAATTY 2 cut(s) 217, 472
Asp718I GGTACC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 148
AsuNHI GCTAGC 2 cut(s) 31, 77
AxyI CCTNAGG 1 cut(s) 447
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 589
BbsI GAAGAC 2 cut(s) 38, 360
BbvI GCAGC 2 cut(s) 523, 685
BccI CCATC 2 cut(s) 10, 406
BcgI CGANNNNNNTGC 6 cut(s) 85, 119, 225, 235, 259, 269
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 4 cut(s) 50, 421, 573, 633
BfaI CTAG 2 cut(s) 32, 78
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 3 cut(s) 36, 537, 699
BlsI GCNGC 3 cut(s) 37, 538, 700
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 125, 387, 751
BmrFI CCNGG 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 3 cut(s) 243, 245, 283
BmtI GCTAGC 2 cut(s) 35, 81
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 2 cut(s) 38, 360
BpmI CTGGAG 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 133
Bse1I ACTGG 1 cut(s) 347
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 21, 236
BseLI CCNNNNNNNGG 2 cut(s) 12, 133
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 4 cut(s) 395, 431, 752, 755
BseXI GCAGC 2 cut(s) 523, 685
BseYI CCCAGC 2 cut(s) 195, 301
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 2 cut(s) 5, 21
BshNI GGYRCC 1 cut(s) 749
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 12, 133
BsmAI GTCTC 4 cut(s) 50, 421, 573, 633
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 2 cut(s) 5, 21
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 162, 385
BspACI CCGC 3 cut(s) 35, 433, 485
BspANI GGCC 2 cut(s) 5, 21
BspLI GGNNCC 3 cut(s) 125, 387, 751
BspMAI CTGCAG 1 cut(s) 703
BspOI GCTAGC 2 cut(s) 35, 81
BspPI GGATC 2 cut(s) 380, 393
BspT107I GGYRCC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 162, 385
BssSI CACGAG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 266, 467, 497
Bst6I CTCTTC 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 33, 79
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 21, 236
BstKTI GATC 2 cut(s) 165, 388
BstMAI GTCTC 4 cut(s) 50, 421, 573, 633
BstMBI GATC 2 cut(s) 162, 385
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 2 cut(s) 523, 685
BstV2I GAAGAC 2 cut(s) 38, 360
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 5, 21
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 21, 236
BtsIMutI CAGTG 5 cut(s) 288, 340, 472, 484, 502
Cac8I GCNNGC 2 cut(s) 33, 79
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 750
CviAII CATG 3 cut(s) 565, 598, 786
CviJI RGCY 8 cut(s) 5, 21, 26, 38, 77, 124, 649, 706
CviKI_1 RGCY 8 cut(s) 5, 21, 26, 38, 77, 124, 649, 706
CviQI GTAC 1 cut(s) 750
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 164, 387
DpnII GATC 2 cut(s) 162, 385
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 665
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 3 cut(s) 568, 601, 789
FaqI GGGAC 1 cut(s) 68
FatI CATG 3 cut(s) 564, 597, 785
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 36, 537, 699
FokI GGATG 2 cut(s) 28, 223
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 36, 537, 699
FspBI CTAG 2 cut(s) 32, 78
GluI GCNGC 3 cut(s) 36, 537, 699
GsaI CCCAGC 2 cut(s) 199, 305
GsuI CTGGAG 1 cut(s) 728
HaeIII GGCC 2 cut(s) 5, 21
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 568, 601, 789
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 3 cut(s) 587, 626, 721
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 246, 728
Hpy188I TCNGA 4 cut(s) 223, 233, 426, 645
Hpy8I GTNNAC 2 cut(s) 246, 728
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 449, 494
HpyCH4III ACNGT 3 cut(s) 266, 467, 497
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 288, 340, 662, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 3 cut(s) 568, 601, 789
KpnI GGTACC 1 cut(s) 753
Kzo9I GATC 2 cut(s) 162, 385
LmnI GCTCC 2 cut(s) 129, 315
LpnPI CCDG 8 cut(s) 8, 35, 147, 181, 287, 328, 528, 692
Lsp1109I GCAGC 2 cut(s) 523, 685
LweI GCATC 3 cut(s) 243, 245, 283
MaeI CTAG 2 cut(s) 32, 78
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 164, 387
MboI GATC 2 cut(s) 162, 385
MboII GAAGA 4 cut(s) 38, 172, 365, 746
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 4 cut(s) 217, 348, 472, 633
MlyI GAGTC 2 cut(s) 581, 635
MmeI TCCRAC 3 cut(s) 151, 185, 645
MnlI CCTC 9 cut(s) 250, 268, 373, 376, 409, 550, 730, 733, 757
MseI TTAA 3 cut(s) 90, 311, 636
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 2 cut(s) 162, 385
NheI GCTAGC 2 cut(s) 31, 77
NlaIII CATG 3 cut(s) 568, 601, 789
NlaIV GGNNCC 3 cut(s) 125, 387, 751
NspI RCATGY 1 cut(s) 601
PfeI GAWTC 1 cut(s) 721
PkrI GCNGC 3 cut(s) 37, 538, 700
PleI GAGTC 2 cut(s) 581, 634
PpsI GAGTC 2 cut(s) 581, 634
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 195, 301
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 125, 387, 751
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 90, 311, 636
SatI GCNGC 3 cut(s) 36, 537, 699
Sau3AI GATC 2 cut(s) 162, 385
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 2 cut(s) 581, 635
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 3 cut(s) 243, 245, 283
SfcI CTRYAG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 4 cut(s) 217, 348, 472, 633
SsiI CCGC 3 cut(s) 35, 433, 485
SspMI CTAG 2 cut(s) 32, 78
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 266, 467, 497
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 95, 245, 768
TasI AATT 4 cut(s) 217, 348, 472, 633
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 3 cut(s) 90, 311, 636
Tru9I TTAA 3 cut(s) 90, 311, 636
TscAI CASTG 5 cut(s) 295, 347, 472, 484, 502
TseI GCWGC 2 cut(s) 536, 698
TspDTI ATGAA 2 cut(s) 275, 773
TspRI CASTG 5 cut(s) 295, 347, 472, 484, 502
XapI RAATTY 2 cut(s) 217, 472
XceI RCATGY 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 245
XspI CTAG 2 cut(s) 32, 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.