Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Reverse (-)

77576 .. 78276

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgctaggtcgctggaaagaagtgaatccagataaagtccgagcatccccgtcgacaatgatgctgatgaaagttgggcaagaggtgttgtcctgcgctaatgctatgctgggggatttgaggagttggtgtcaaggcgttattgtaaacgagaagttgcattgggtaattgaagactacaatctcaagtttgatgacgaggaggatcctattgttgtctttgatttggagatggaggagtttcagagactgcggcttccgtttcttaaggttgaaggagatgatagtgtgaatttcagtgttgcgattttttgtagtgaagggtgtctgtgtctatggcgttatggaagtcttgttgcttctggttctgttgatttttgggtcatggaaaggtatggagacaatgactcatggaacatgctttatagctttaggatttccaacgagtctccgattaagtttctgaagccacttgtagttgcagagagtagtcaagttcttgtgagatgttctactgctgcagagctggagttggtaacactatgccaaaaaggccttcagacggcagaactgttctgtcgtctgaatgaacaaaaatgtgtcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

4.68

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	200, 213
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	485, 542
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	173, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	2 cut(s)	429, 526
AluI	AGCT	2 cut(s)	429, 526
Alw26I	GTCTC	3 cut(s)	241, 393, 453
AlwI	GGATC	2 cut(s)	200, 213
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	4 cut(s)	33, 43, 67, 77
BcoDI	GTCTC	3 cut(s)	241, 393, 453
BfaI	CTAG	2 cut(s)	5, 607
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	254, 519
BlsI	GCNGC	2 cut(s)	255, 520
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	51, 53
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseRI	GAGGAG	3 cut(s)	136, 215, 251
BseXI	GCAGC	1 cut(s)	505
BseYI	CCCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	3 cut(s)	241, 393, 453
BsnI	GGCC	1 cut(s)	555
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	2 cut(s)	200, 213
BspTI	CTTAAG	1 cut(s)	266
BssMI	GATC	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	573
BstAFI	CTTAAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	3 cut(s)	241, 393, 453
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	98
CviAII	CATG	3 cut(s)	385, 411, 418
CviJI	RGCY	5 cut(s)	256, 429, 469, 526, 555
CviKI_1	RGCY	5 cut(s)	256, 429, 469, 526, 555
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	555
Eco57I	CTGAAG	2 cut(s)	485, 542
FaeI	CATG	3 cut(s)	388, 414, 421
FaiI	YATR	9 cut(s)	107, 337, 345, 386, 396, 412, 419, 426, 544
FatI	CATG	3 cut(s)	384, 410, 417
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	254, 519
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	254, 519
FspBI	CTAG	2 cut(s)	5, 607
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	254, 519
GsaI	CCCAGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	1 cut(s)	555
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	388, 414, 421
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	25, 407, 446
Hpy166II	GTNNAC	2 cut(s)	54, 148
Hpy188I	TCNGA	6 cut(s)	41, 246, 453, 465, 561, 585
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	54, 148
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	269, 314, 566
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	160, 482, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	388, 414, 421
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	42, 95, 106, 348, 512
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	51, 53
MaeI	CTAG	2 cut(s)	5, 607
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	168, 292
MlyI	GAGTC	2 cut(s)	401, 455
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	5 cut(s)	76, 114, 193, 196, 229
MseI	TTAA	2 cut(s)	267, 456
MspCI	CTTAAG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	552
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	388, 414, 421
NlaIV	GGNNCC	1 cut(s)	207
NspI	RCATGY	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	255, 520
PleI	GAGTC	2 cut(s)	401, 454
PpsI	GAGTC	2 cut(s)	401, 454
PspFI	CCCAGC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	267, 456
SatI	GCNGC	2 cut(s)	254, 519
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	401, 455
SetI	ASST	6 cut(s)	10, 87, 273, 395, 431, 528
SfaNI	GCATC	2 cut(s)	51, 53
SfcI	CTRYAG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	185, 266
SmoI	CTYRAG	2 cut(s)	185, 266
Sse9I	AATT	2 cut(s)	168, 292
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	5, 607
StuI	AGGCCT	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	168, 292
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	267, 456
Tru9I	TTAA	2 cut(s)	267, 456
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	83, 603
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	2 cut(s)	5, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.