Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Forward (+)

21146645 .. 21149580

Gene Structure 2936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATGATCCTCCAAATTTTCAAGAAGCTGCCGGTGAAGGCATTATCACGATCCAAGCTAGTTTCCAAACGCTGGAAGAAGCTCATATCCCACTCCAAATTCGCCCAATCCCACTTCGAATCGGCCCATATGAACCAAACCCTAACCCGCTCACTCCTCCTCTCAGTCTCCACCAAAACCCCCCAGCTCGAATCCCTTGAATTGGACCGACCGTACGTACTGGAGGCTACCGGAGCCTACGAACTCATCCAGCTGTCCGCTAATTATGGTGTTATTGTAAACGAGAAGCTGCATTGGGTGATTGAGGACTACAATCTCGAGTTTGATGACGAGGAGGACCCTATTGTTGCTTTTGATTTGGAGTCGGAGGAGTTTCGGAGACTGCGGCTTCCGTTTCCTAAGGTTGAAGGAGATGACAGTGTGAATTTCAGCGTTGCGGTTTTTTGCAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

151

Amino Acids

17.42

Weight (kDa)

5.59

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	4 cut(s)	148, 258, 385, 437
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	15, 98, 424
AfaI	GTAC	3 cut(s)	215, 219, 451
AfiI	CCNNNNNNNGG	2 cut(s)	72, 202
AgsI	TTSAA	3 cut(s)	22, 200, 407
AluBI	AGCT	6 cut(s)	28, 58, 82, 187, 253, 289
AluI	AGCT	6 cut(s)	28, 58, 82, 187, 253, 289
Alw26I	GTCTC	2 cut(s)	172, 373
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	28, 289
ApoI	RAATTY	3 cut(s)	15, 98, 424
AspS9I	GGNCC	3 cut(s)	124, 205, 337
AsuHPI	GGTGA	2 cut(s)	46, 310
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	205, 337
AxyI	CCTNAGG	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	15, 276
BcoDI	GTCTC	2 cut(s)	172, 373
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	3 cut(s)	29, 290, 386
BlsI	GCNGC	3 cut(s)	30, 291, 387
Bme18I	GGWCC	2 cut(s)	205, 337
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	124, 205, 337
BmiI	GGNNCC	2 cut(s)	235, 339
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	117
BsaAI	YACGTR	2 cut(s)	217, 453
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 202
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	72, 202
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	4 cut(s)	146, 149, 347, 383
BseXI	GCAGC	2 cut(s)	15, 276
BseYI	CCCAGC	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	32, 231
BsiWI	CGTACG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	72, 202
BsmAI	GTCTC	2 cut(s)	172, 373
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	6, 50
BspACI	CCGC	4 cut(s)	148, 258, 385, 437
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	235, 339
BspPI	GGATC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	2 cut(s)	6, 50
Bst4CI	ACNGT	2 cut(s)	213, 419
BstBAI	YACGTR	2 cut(s)	217, 453
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	163, 399
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	9, 53
BstMAI	GTCTC	2 cut(s)	172, 373
BstMBI	GATC	2 cut(s)	6, 50
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	15, 276
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	124, 205, 337
Csp6I	GTAC	3 cut(s)	214, 218, 450
CviQI	GTAC	3 cut(s)	214, 218, 450
DdeI	CTNAG	2 cut(s)	163, 399
DpnI	GATC	2 cut(s)	8, 52
DpnII	GATC	2 cut(s)	6, 50
Eco105I	TACGTA	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	205, 337
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	337
FaiI	YATR	4 cut(s)	86, 129, 131, 267
FauI	CCCGC	1 cut(s)	155
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	29, 290, 386
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	29, 290, 386
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	3 cut(s)	29, 290, 386
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	2 cut(s)	32, 231
HinfI	GANTC	3 cut(s)	119, 191, 362
HpaII	CCGG	2 cut(s)	32, 231
HphI	GGTGA	2 cut(s)	46, 310
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	367, 378
Hpy188III	TCNNGA	3 cut(s)	22, 48, 317
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	31, 401
HpyCH4III	ACNGT	2 cut(s)	213, 419
HpyCH4IV	ACGT	2 cut(s)	216, 452
HpyCH4V	TGCA	2 cut(s)	292, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	163, 399
HpySE526I	ACGT	2 cut(s)	216, 452
Kzo9I	GATC	2 cut(s)	6, 50
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	45, 58, 197, 206, 244, 263
Lsp1109I	GCAGC	2 cut(s)	15, 276
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	216, 452
MalI	GATC	2 cut(s)	8, 52
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	6, 50
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	5 cut(s)	15, 98, 200, 262, 424
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	8 cut(s)	20, 167, 170, 217, 298, 325, 328, 361
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	2 cut(s)	32, 231
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	2 cut(s)	6, 50
NlaIV	GGNNCC	2 cut(s)	235, 339
NspV	TTCGAA	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	119, 191
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	30, 291, 387
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	2 cut(s)	217, 453
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	183
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	235, 339
PspPI	GGNCC	3 cut(s)	124, 205, 337
PspPPI	RGGWCCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	3 cut(s)	215, 219, 451
RsaNI	GTAC	3 cut(s)	214, 218, 450
SatI	GCNGC	3 cut(s)	29, 290, 386
Sau3AI	GATC	2 cut(s)	6, 50
Sau96I	GGNCC	3 cut(s)	124, 205, 337
SchI	GAGTC	1 cut(s)	371
SetI	ASST	9 cut(s)	30, 60, 84, 189, 219, 255, 291, 405, 455
Sfr274I	CTCGAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	2 cut(s)	205, 337
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SnaBI	TACGTA	1 cut(s)	217
Sse9I	AATT	5 cut(s)	15, 98, 200, 262, 424
SsiI	CCGC	4 cut(s)	148, 258, 385, 437
SspMI	CTAG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	213, 419
TaiI	ACGT	2 cut(s)	219, 455
TaqI	TCGA	3 cut(s)	117, 189, 318
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	15, 98, 200, 262, 424
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	119, 191
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	28, 289
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	205, 337
XapI	RAATTY	3 cut(s)	15, 98, 424
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.