Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006431.1

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Reverse (-)

4940 .. 5619

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006431.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgctgggtcgctggaaagaagtgaatccagataaagtccgagcatccccgtcgacaatgatgctgaccaacggtgggcaagaggtgttgttctgcgctgatgctacgctgggggatttgaggtgtcaaggcgttattgtaaacgagaagttgcattgggtaattgaagactacaatctcaagtttgatgacgaggaggatcctattattgtctttgatttggagatggaggagtttcggagactgtggcttccgtttcctaaggttgaaagagatgacagtgtaaatttcaatgttgaggttttttgcagtgaagggtgtctgtgtctatggtgttatggaagtcttgctgcctctggttctgttgatttttgggtcatggaaaggtatgaagacaacgactcgtggaacatgctttatagctttaggatttccaacgagtcttcgattaagtttctgaagccacttgtagttgcagagaatagtcaagttcttgtgagatgttctactgctgcagagctggagttggtaagggtggacaagaagaggaggagcgtgatacctatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

189

Amino Acids

21.85

Weight (kDa)

4.64

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	167, 269, 292
AluBI	AGCT	2 cut(s)	423, 520
AluI	AGCT	2 cut(s)	423, 520
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	194, 207
ApeKI	GCWGC	2 cut(s)	350, 512
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	403
BbsI	GAAGAC	3 cut(s)	174, 399, 435
BbvI	GCAGC	2 cut(s)	337, 499
BccI	CCATC	1 cut(s)	220
BcgI	CGANNNNNNTGC	4 cut(s)	33, 43, 67, 77
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	2 cut(s)	351, 513
BlsI	GCNGC	2 cut(s)	352, 514
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	3 cut(s)	51, 53, 91
BpiI	GAAGAC	3 cut(s)	174, 399, 435
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseRI	GAGGAG	4 cut(s)	209, 245, 562, 565
BseXI	GCAGC	2 cut(s)	337, 499
BseYI	CCCAGC	2 cut(s)	4, 109
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	194, 207
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	3 cut(s)	74, 246, 281
Bst6I	CTCTTC	1 cut(s)	539
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	337, 499
BstV2I	GAAGAC	3 cut(s)	174, 399, 435
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	286, 316
CfoI	GCGC	1 cut(s)	98
CviAII	CATG	2 cut(s)	379, 412
CviJI	RGCY	4 cut(s)	250, 423, 463, 520
CviKI_1	RGCY	4 cut(s)	250, 423, 463, 520
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	479
Eco81I	CCTNAGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	382, 415
FaiI	YATR	8 cut(s)	331, 339, 380, 390, 413, 420, 566, 568
FatI	CATG	2 cut(s)	378, 411
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	351, 513
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	351, 513
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	351, 513
GsaI	CCCAGC	2 cut(s)	8, 113
GsuI	CTGGAG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	382, 415
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	25, 401, 440
Hpy166II	GTNNAC	3 cut(s)	54, 142, 538
Hpy188I	TCNGA	3 cut(s)	41, 240, 459
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	54, 142, 538
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	74, 246, 281
HpyCH4V	TGCA	4 cut(s)	154, 309, 476, 515
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	382, 415
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	552
LpnPI	CCDG	4 cut(s)	42, 95, 342, 506
Lsp1109I	GCAGC	2 cut(s)	337, 499
LweI	GCATC	3 cut(s)	51, 53, 91
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	179, 404, 435, 556
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	162, 286
MlyI	GAGTC	2 cut(s)	395, 449
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	9 cut(s)	76, 114, 187, 190, 223, 292, 364, 540, 543
MseI	TTAA	1 cut(s)	450
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	382, 415
NlaIV	GGNNCC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	352, 514
PleI	GAGTC	2 cut(s)	395, 448
PpsI	GAGTC	2 cut(s)	395, 448
PspFI	CCCAGC	2 cut(s)	4, 109
PspN4I	GGNNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	351, 513
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	395, 449
SetI	ASST	8 cut(s)	87, 125, 267, 303, 389, 425, 522, 565
SfaNI	GCATC	3 cut(s)	51, 53, 91
SfcI	CTRYAG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	162, 286
TaaI	ACNGT	3 cut(s)	74, 246, 281
TaqI	TCGA	2 cut(s)	53, 446
TasI	AATT	2 cut(s)	162, 286
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	286, 316
TseI	GCWGC	2 cut(s)	350, 512
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	286, 316
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.