RLG00000012163

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005896
Physical Location & Seq
Forward (+)
15860444 .. 15861502
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012163

Sequence Viewer

Length: 531 bp
ATGGTGATCTGGCGGCAGTTTGGAGATACCGACTGGGTAGAACACTTGGCGGTCCGGCAGCAATGGCCGTGGTGGGGATGGGCTAGGCTTGGCTGGGGGCTTATAGTCTTCATTCGGAGACTGTACTTTTCTGTAAAGCTAGCCTCCCCTTTAACTAGACCCGACTGCGACGTCTTGCTGTTGGGCTCCTGCAATGGGCTCCAACTTCCTGTGAACGATGTTTCTCCCAAAAAGAAGACCGTGAAGGGTGTCTGTGTCTATGGCATTATGGAAGTCTTGCTGCCTCTGGTTCTGTTGATTTTAAGGTCATGGAAAGGTATGGAGACAATGACTCGTGGAACATGCTTTATAGCTTTAGGATTTCCAACGAGTCCCCGATTAAGTTTGAAGCCACTTGTAGTTGCGGAGAGTAGTCAAGTTCTGGTGAGATGTTCTACTGCTGCAGAGCTGGAGTTGGTAAGGTTTTGTGGACAAGAAGAGGAGGAGCGTGGTACCTATATGAATGAGGCCGAGCAAATGTTATGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.1

Weight (kDa)

8.24

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 174
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 491
AciI CCGC 3 cut(s) 13, 50, 404
AcoI YGGCCR 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 125, 493
AfiI CCNNNNNNNGG 2 cut(s) 74, 195
AgsI TTSAA 1 cut(s) 388
AluBI AGCT 3 cut(s) 139, 353, 448
AluI AGCT 3 cut(s) 139, 353, 448
Alw26I GTCTC 2 cut(s) 112, 317
AoxI GGCC 2 cut(s) 65, 507
ApeKI GCWGC 3 cut(s) 58, 280, 440
Asp718I GGTACC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 16, 436
AsuNHI GCTAGC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 188, 201
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 2 cut(s) 100, 242
BbvI GCAGC 3 cut(s) 70, 267, 427
BccI CCATC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 112, 317
BfaI CTAG 3 cut(s) 84, 140, 156
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 4 cut(s) 14, 59, 281, 441
BlsI GCNGC 4 cut(s) 15, 60, 282, 442
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 187, 200, 493
BmrI ACTGGG 1 cut(s) 43
BmtI GCTAGC 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 100, 242
BpmI CTGGAG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 195
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 68, 199
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 74, 195
BseMI GCAATG 2 cut(s) 68, 199
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 494, 497
BseXI GCAGC 3 cut(s) 70, 267, 427
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 67, 509
BshNI GGYRCC 1 cut(s) 491
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 74, 195
BsmAI GTCTC 2 cut(s) 112, 317
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 2 cut(s) 67, 509
Bsp1286I GDGCHC 2 cut(s) 188, 201
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 3 cut(s) 13, 50, 404
BspANI GGCC 2 cut(s) 67, 509
BspLI GGNNCC 3 cut(s) 187, 200, 493
BspMAI CTGCAG 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 68, 199
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 123, 241
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 112, 317
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 70, 267, 427
BstV2I GAAGAC 2 cut(s) 100, 242
BsuRI GGCC 2 cut(s) 67, 509
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 52
CpoI CGGWCCG 1 cut(s) 52
Csp6I GTAC 2 cut(s) 124, 492
CspCI CAANNNNNGTGG 2 cut(s) 50, 85
CspI CGGWCCG 1 cut(s) 52
CviAII CATG 3 cut(s) 309, 342, 528
CviQI GTAC 2 cut(s) 124, 492
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 188, 201
Eco47I GGWCC 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 188, 201
FaeI CATG 3 cut(s) 312, 345, 531
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 308, 341, 527
Fnu4HI GCNGC 4 cut(s) 14, 59, 281, 441
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 2 cut(s) 188, 201
Fsp4HI GCNGC 4 cut(s) 14, 59, 281, 441
FspBI CTAG 3 cut(s) 84, 140, 156
GluI GCNGC 4 cut(s) 14, 59, 281, 441
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 2 cut(s) 67, 509
HapII CCGG 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 3 cut(s) 312, 345, 531
HinfI GANTC 2 cut(s) 331, 370
HpaII CCGG 1 cut(s) 55
HphI GGTGA 2 cut(s) 16, 436
Hpy166II GTNNAC 2 cut(s) 214, 470
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 2 cut(s) 214, 470
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 123, 241
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 192, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 312, 345, 531
KpnI GGTACC 1 cut(s) 495
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 3 cut(s) 191, 204, 484
LpnPI CCDG 8 cut(s) 19, 68, 79, 202, 222, 272, 407, 434
Lsp1109I GCAGC 3 cut(s) 70, 267, 427
MaeI CTAG 3 cut(s) 84, 140, 156
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 100, 247, 488
MhlI GDGCHC 2 cut(s) 188, 201
MlyI GAGTC 2 cut(s) 325, 379
MmeI TCCRAC 2 cut(s) 226, 389
MnlI CCTC 5 cut(s) 154, 294, 472, 475, 499
MseI TTAA 3 cut(s) 152, 302, 380
MspI CCGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 6
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 3 cut(s) 312, 345, 531
NlaIV GGNNCC 3 cut(s) 187, 200, 493
NspI RCATGY 1 cut(s) 345
PkrI GCNGC 4 cut(s) 15, 60, 282, 442
PleI GAGTC 2 cut(s) 325, 378
PpsI GAGTC 2 cut(s) 325, 378
PspFI CCCAGC 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 187, 200, 493
PspPI GGNCC 1 cut(s) 52
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 2 cut(s) 125, 493
RsaNI GTAC 2 cut(s) 124, 492
Rsr2I CGGWCCG 1 cut(s) 52
RsrII CGGWCCG 1 cut(s) 52
SaqAI TTAA 3 cut(s) 152, 302, 380
SatI GCNGC 4 cut(s) 14, 59, 281, 441
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 325, 379
SduI GDGCHC 2 cut(s) 188, 201
SetI ASST 8 cut(s) 141, 174, 308, 319, 355, 450, 464, 497
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 52
SsiI CCGC 3 cut(s) 13, 50, 404
SspMI CTAG 3 cut(s) 84, 140, 156
TaaI ACNGT 2 cut(s) 123, 241
TaiI ACGT 1 cut(s) 174
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 3 cut(s) 152, 302, 380
Tru9I TTAA 3 cut(s) 152, 302, 380
TseI GCWGC 3 cut(s) 58, 280, 440
TspDTI ATGAA 2 cut(s) 100, 515
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 1 cut(s) 345
XspI CTAG 3 cut(s) 84, 140, 156
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.