Rroxscaffold_7G00189280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005896
Physical Location & Seq
Reverse (-)
29002898 .. 29015422
12525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189280.1

Sequence Viewer

Length: 354 bp
ATGGTCGTGGTGGGGATGGGCCAAGCTTGGTTGGAGGCTTATGGTCTTCCTCTTTCCTTGCGGCTCGCATCCCTAAAACCGGATCGGCTTCCTTTGGAGACCAGCGGAAGTGTTCCGGATGAATTTCTATTCGAAAAGTATGACTTTAGGGGGGTTGCTAAGGTGAGGTACTGTATCAATTATGGATCGAGGTATCAAGGTGTTATTGTAAATGGGAAGCTGCATTGGGTAATTGAGGACTACAATCTCGAGTTTGATGACGACAAGGATCCTATTGTTGTCTTTGACTTGGAGATGGAGGAGTTTCGAGATTGCGGCTTTCGTTTCCTAAGGTTGAAGGAGATGACGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.62

Weight (kDa)

4.75

Isoelectric Point (pI)

17.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 3 cut(s) 61, 105, 315
AclWI GGATC 4 cut(s) 90, 193, 263, 276
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 2 cut(s) 26, 220
AluI AGCT 2 cut(s) 26, 220
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 4 cut(s) 90, 193, 263, 276
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 329
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 10, 289
BcoDI GTCTC 1 cut(s) 92
BisI GCNGC 3 cut(s) 62, 221, 316
BlsI GCNGC 3 cut(s) 63, 222, 317
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 92
BsaWI WCCGGW 2 cut(s) 79, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 115
BseGI GGATG 3 cut(s) 21, 68, 124
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 80, 116
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 132
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 3 cut(s) 82, 185, 268
BspACI CCGC 3 cut(s) 61, 105, 315
BspANI GGCC 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 90, 193, 263, 276
BspT104I TTCGAA 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 92
BssMI GATC 3 cut(s) 82, 185, 268
Bst4CI ACNGT 2 cut(s) 173, 349
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 159, 329
BstF5I GGATG 3 cut(s) 21, 68, 124
BstKTI GATC 3 cut(s) 85, 188, 271
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 82, 185, 268
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 329
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 3 cut(s) 21, 68, 124
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 7 cut(s) 21, 26, 38, 64, 88, 220, 318
CviKI_1 RGCY 7 cut(s) 21, 26, 38, 64, 88, 220, 318
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 159, 329
DpnI GATC 3 cut(s) 84, 187, 270
DpnII GATC 3 cut(s) 82, 185, 268
Eco31I GGTCTC 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 248
FaiI YATR 3 cut(s) 42, 141, 183
FalI AAGNNNNNCTT 2 cut(s) 128, 160
Fnu4HI GCNGC 3 cut(s) 62, 221, 316
FokI GGATG 3 cut(s) 28, 55, 131
Fsp4HI GCNGC 3 cut(s) 62, 221, 316
GluI GCNGC 3 cut(s) 62, 221, 316
HaeIII GGCC 1 cut(s) 21
HapII CCGG 2 cut(s) 80, 116
HindIII AAGCTT 1 cut(s) 24
HpaII CCGG 2 cut(s) 80, 116
HphI GGTGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 116, 248, 308
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 173, 349
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 159, 329
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 82, 185, 268
LpnPI CCDG 3 cut(s) 93, 115, 129
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 77
MalI GATC 3 cut(s) 84, 187, 270
MboI GATC 3 cut(s) 82, 185, 268
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 268
MluCI AATT 3 cut(s) 122, 178, 231
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 28, 60, 159, 183, 229, 292
MroI TCCGGA 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 2 cut(s) 80, 116
NdeII GATC 3 cut(s) 82, 185, 268
NlaIV GGNNCC 1 cut(s) 270
NspV TTCGAA 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 248
PkrI GCNGC 3 cut(s) 63, 222, 317
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 3 cut(s) 62, 221, 316
Sau3AI GATC 3 cut(s) 82, 185, 268
Sau96I GGNCC 1 cut(s) 19
SetI ASST 7 cut(s) 28, 165, 170, 194, 202, 222, 335
SfaNI GCATC 1 cut(s) 77
Sfr274I CTCGAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 122, 178, 231
SsiI CCGC 3 cut(s) 61, 105, 315
TaaI ACNGT 2 cut(s) 173, 349
TaqI TCGA 4 cut(s) 132, 188, 249, 307
TasI AATT 3 cut(s) 122, 178, 231
TauI GCSGC 2 cut(s) 64, 318
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 135
XapI RAATTY 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.