RLG00000008160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005896
Physical Location & Seq
Forward (+)
26347952 .. 26348808
857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008160

Sequence Viewer

Length: 564 bp
ATGGCTCAGCGATGGCGGTCCGGCGGCGGTCTGCAGATACCGGCGGGGCAGAACACTTGGCAGTCAAGCGGCGGTGGTTGTGCTGGGGATGGGCTAGGCTTGGCTGGAGGCTTATGGTCTTCTTCTTTCCTTGCAGCTATCATCCCTAGAACTGGATCGGCTTCCCTTCGGAGACAGTACTTCCGCCGTAAAGCTCGCCTCCCCTTTAACCCGACCCGACTGCAACGTCTTGCTATTGGGCTCCTGCAATGGGCTCCGTTTTTGCCAACAAGATCGGTGAAAGAACGTGTTATTGTAAACGAGAAGCTACATCGGGTAATTGAGGACTACAATCTCGAGTTTGATGACGAGGAGGATCCTATTGTTGTCTTTGATTTGGAGATGGAGAAGTTTCGGAAACTGCGGCTTCTGTTTCCTAAGGTTGAAGGAGATGACAGTGTGAATTTCAGTGTTGCGGTTTTTTGCAGTGAAGGGTGTCTATGTCTATGGCATTATGGAAGTTTTGCTGCCCCTGGTTCTATTGATTTTTGGGTCATGGAATGGTATGGAGACAATGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.05

Weight (kDa)

6.14

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 225
AciI CCGC 9 cut(s) 16, 24, 27, 44, 69, 72, 184, 403, 455
AclWI GGATC 3 cut(s) 163, 350, 363
AcsI RAATTY 1 cut(s) 442
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 152, 250
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 3 cut(s) 137, 194, 307
AluI AGCT 3 cut(s) 137, 194, 307
Alw26I GTCTC 2 cut(s) 166, 543
AlwI GGATC 3 cut(s) 163, 350, 363
Ama87I CYCGRG 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 134, 506
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 1 cut(s) 18
AxyI CCTNAGG 1 cut(s) 417
BamHI GGATCC 1 cut(s) 355
BanII GRGCYC 2 cut(s) 243, 256
BauI CACGAG 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 146, 493
BccI CCATC 3 cut(s) 6, 83, 376
BceAI ACGGC 1 cut(s) 171
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 166, 543
BfaI CTAG 2 cut(s) 95, 147
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 5 cut(s) 25, 70, 135, 404, 507
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 5 cut(s) 26, 71, 136, 405, 508
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 513
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 3 cut(s) 242, 255, 357
BmrFI CCNGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 250
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 157
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 2 cut(s) 94, 141
BseLI CCNNNNNNNGG 2 cut(s) 152, 250
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 146, 493
BseYI CCCAGC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 2 cut(s) 21, 41
BslI CCNNNNNNNGG 2 cut(s) 152, 250
BsmAI GTCTC 2 cut(s) 166, 543
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 243, 256
Bsp143I GATC 3 cut(s) 155, 272, 355
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 9 cut(s) 16, 24, 27, 44, 69, 72, 184, 403, 455
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 3 cut(s) 242, 255, 357
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 3 cut(s) 163, 350, 363
BsrDI GCAATG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 3 cut(s) 155, 272, 355
BssSI CACGAG 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 177, 437
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 6, 417
BstF5I GGATG 2 cut(s) 94, 141
BstKTI GATC 3 cut(s) 158, 275, 358
BstMAI GTCTC 2 cut(s) 166, 543
BstMBI GATC 3 cut(s) 155, 272, 355
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 146, 493
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
Bsu36I CCTNAGG 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 94, 141
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 442, 454, 472
Cac8I GCNNGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 18
CpoI CGGWCCG 1 cut(s) 18
Csp6I GTAC 1 cut(s) 178
CspI CGGWCCG 1 cut(s) 18
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 6, 417
DpnI GATC 3 cut(s) 157, 274, 357
DpnII GATC 3 cut(s) 155, 272, 355
DrdI GACNNNNNNGTC 1 cut(s) 225
DseDI GACNNNNNNGTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 173
Eco24I GRGCYC 2 cut(s) 243, 256
Eco47I GGWCC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 511
EcoT38I GRGCYC 2 cut(s) 243, 256
FaeI CATG 1 cut(s) 538
FaiI YATR 6 cut(s) 115, 481, 487, 495, 536, 546
FatI CATG 1 cut(s) 534
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 25, 70, 135, 404, 507
FokI GGATG 2 cut(s) 101, 128
FriOI GRGCYC 2 cut(s) 243, 256
Fsp4HI GCNGC 5 cut(s) 25, 70, 135, 404, 507
FspBI CTAG 2 cut(s) 95, 147
GluI GCNGC 5 cut(s) 25, 70, 135, 404, 507
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 126
HapII CCGG 2 cut(s) 21, 41
Hin1II CATG 1 cut(s) 538
HinfI GANTC 1 cut(s) 557
HpaII CCGG 2 cut(s) 21, 41
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 171, 396
Hpy188III TCNNGA 2 cut(s) 335, 561
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 176, 419, 464
HpyCH4III ACNGT 2 cut(s) 177, 437
HpyCH4IV ACGT 2 cut(s) 226, 286
HpyCH4V TGCA 5 cut(s) 34, 134, 223, 247, 465
HpyF3I CTNAG 2 cut(s) 6, 417
HpySE526I ACGT 2 cut(s) 226, 286
Hsp92II CATG 1 cut(s) 538
Kzo9I GATC 3 cut(s) 155, 272, 355
LmnI GCTCC 2 cut(s) 246, 259
LpnPI CCDG 8 cut(s) 34, 54, 69, 90, 138, 257, 498, 525
Lsp1109I GCAGC 2 cut(s) 146, 493
MaeI CTAG 2 cut(s) 95, 147
MaeII ACGT 2 cut(s) 226, 286
MalI GATC 3 cut(s) 157, 274, 357
MboI GATC 3 cut(s) 155, 272, 355
MboII GAAGA 2 cut(s) 111, 114
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 243, 256
MluCI AATT 2 cut(s) 318, 442
MlyI GAGTC 1 cut(s) 551
MnlI CCTC 5 cut(s) 101, 209, 316, 343, 346
MseI TTAA 1 cut(s) 207
MspI CCGG 2 cut(s) 21, 41
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
NdeII GATC 3 cut(s) 155, 272, 355
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 3 cut(s) 242, 255, 357
PaeR7I CTCGAG 1 cut(s) 335
PkrI GCNGC 5 cut(s) 26, 71, 136, 405, 508
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 242, 255, 357
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Rsr2I CGGWCCG 1 cut(s) 18
RsrII CGGWCCG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 5 cut(s) 25, 70, 135, 404, 507
Sau3AI GATC 3 cut(s) 155, 272, 355
Sau96I GGNCC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 2 cut(s) 243, 256
SetI ASST 6 cut(s) 139, 196, 229, 289, 309, 423
SfcI CTRYAG 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 318, 442
SsiI CCGC 9 cut(s) 16, 24, 27, 44, 69, 72, 184, 403, 455
SspMI CTAG 2 cut(s) 95, 147
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 2 cut(s) 177, 437
TaiI ACGT 2 cut(s) 229, 289
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 318, 442
TatI WGTACW 1 cut(s) 177
TauI GCSGC 3 cut(s) 27, 72, 406
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 442, 454, 472
TseI GCWGC 2 cut(s) 134, 506
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 3 cut(s) 442, 454, 472
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 335
XspI CTAG 2 cut(s) 95, 147
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.