Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

10919736 .. 10920620

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACGTCATGCGCTGAGTTGTCCGCGACACAAGGGCCCACTCTTCACCACCAACCCGAGGCCTCCACCACACTCTCCCGCATCGGCCTCGCCATCATGGGCCAGAACCTCGCCCTCAACATCGCCGAGAAAGGCTTCCCCATCTCTGTCTACAACCGCACCTCCTCCAAGATCGACGAGACCGTCCACCGCGCAGCCACCGAGGGCGACCTCCCTCTCTTCGGCCAGTACACCCCCAAAGACTTCGTCCTCTCTCTCCAGCGCCCCCGATCCGTCATCATCCTCGTCAAGGCCGGCGCTCCCGTCGACCAGACCATCGCCGCCTTGTCTGCCTACATGGAGCCCGGCGACGCCATCATCGACGACGGCAACGAGTGGTACGAGAACACCAAGCACCGCATCCACGAGGCTTCTGCCAGGGGCCTCCTCTACCTCGGCATGGGCGTCTCCGGCAGTGAGGAAGGCGCTCGCCACGGCCCTAGCCTCATGCCCGGGGGGGCGCTGGAGAGAGAGGACGAAGTCTTTAGGGGTGTACTGGCCGGAGAGAGGGAGGTCGCCCTCAGTGTCGGCGCGGTGGACGATCTCGTCGACCTTGGAGGAGGTGCGGTTGTAGACGGCGATGGGGAAGCCTTTCTCGGCGATGTTGAGGGCGAGGTTCTTGCCCATGACGGCAAGGCCGATGCGGGAGAGTGCGGTGGAGAAGAGCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

238

Amino Acids

24.89

Weight (kDa)

4.57

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	27 - 169	4.9e-37	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	182, 584
AatII	GACGTC	1 cut(s)	8
AccI	GTMKAC	4 cut(s)	150, 306, 588, 612
AccII	CGCG	3 cut(s)	26, 192, 572
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	223, 537
AcyI	GRCGYC	3 cut(s)	5, 351, 444
AfaI	GTAC	3 cut(s)	230, 380, 534
AfiI	CCNNNNNNNGG	5 cut(s)	58, 221, 289, 439, 546
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	706
AluI	AGCT	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	173, 451
AlwI	GGATC	1 cut(s)	264
Ama87I	CYCGRG	2 cut(s)	56, 491
ApaI	GGGCCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	2 cut(s)	134, 630
AspLEI	GCGC	7 cut(s)	14, 194, 264, 299, 467, 502, 572
AspS9I	GGNCC	5 cut(s)	35, 36, 100, 421, 476
AsuC2I	CCSGG	3 cut(s)	345, 492, 493
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	2 cut(s)	56, 491
BaeGI	GKGCMC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	39, 345
BauI	CACGAG	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	5 cut(s)	101, 149, 323, 362, 614
BceAI	ACGGC	4 cut(s)	382, 490, 631, 685
BcgI	CGANNNNNNTGC	6 cut(s)	70, 104, 395, 429, 641, 675
BciT130I	CCWGG	1 cut(s)	418
BcnI	CCSGG	3 cut(s)	345, 492, 493
BcoDI	GTCTC	2 cut(s)	173, 451
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	4 cut(s)	265, 300, 468, 503
BisI	GCNGC	2 cut(s)	195, 321
BlsI	GCNGC	2 cut(s)	196, 322
Bme1390I	CCNGG	4 cut(s)	345, 418, 492, 493
BmeT110I	CYCGRG	2 cut(s)	56, 491
BmgT120I	GGNCC	5 cut(s)	35, 36, 100, 421, 476
BmiI	GGNNCC	3 cut(s)	37, 342, 422
BmrFI	CCNGG	4 cut(s)	345, 418, 492, 493
BmsI	GCATC	3 cut(s)	90, 408, 670
BpmI	CTGGAG	2 cut(s)	242, 524
BpuMI	CCSGG	3 cut(s)	345, 492, 493
BsaHI	GRCGYC	3 cut(s)	5, 351, 444
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	8 cut(s)	57, 201, 417, 433, 472, 491, 492, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 591, 621
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 221, 289, 439, 546
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	226, 540
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	8 cut(s)	57, 201, 417, 433, 472, 491, 492, 592
BseGI	GGATG	2 cut(s)	279, 399
BseLI	CCNNNNNNNGG	5 cut(s)	58, 221, 289, 439, 546
BseMII	CTCAG	3 cut(s)	6, 574, 698
BseNI	ACTGG	2 cut(s)	226, 540
BseRI	GAGGAG	3 cut(s)	154, 416, 612
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	206
Bsh1236I	CGCG	3 cut(s)	26, 192, 572
BsiHKCI	CYCGRG	2 cut(s)	56, 491
BsiSI	CCGG	5 cut(s)	294, 345, 450, 492, 540
BslI	CCNNNNNNNGG	5 cut(s)	58, 221, 289, 439, 546
BsmAI	GTCTC	2 cut(s)	173, 451
BsmBI	CGTCTC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	173
BsoBI	CYCGRG	2 cut(s)	56, 491
Bsp120I	GGGCCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	39, 345
Bsp143I	GATC	3 cut(s)	171, 269, 580
BspCNI	CTCAG	3 cut(s)	7, 573, 699
BspFNI	CGCG	3 cut(s)	26, 192, 572
BspLI	GGNNCC	3 cut(s)	37, 342, 422
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	226, 540
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	8 cut(s)	57, 201, 417, 433, 472, 491, 492, 592
BssMI	GATC	3 cut(s)	171, 269, 580
BssNI	GRCGYC	3 cut(s)	5, 351, 444
BssSI	CACGAG	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	48, 224, 696
BstACI	GRCGYC	3 cut(s)	5, 351, 444
BstC8I	GCNNGC	2 cut(s)	295, 469
BstDEI	CTNAG	3 cut(s)	15, 560, 707
BstDSI	CCRYGG	1 cut(s)	472
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	279, 399
BstFNI	CGCG	3 cut(s)	26, 192, 572
BstH2I	RGCGCY	4 cut(s)	265, 300, 468, 503
BstHHI	GCGC	7 cut(s)	14, 194, 264, 299, 467, 502, 572
BstKTI	GATC	3 cut(s)	174, 272, 583
BstMAI	GTCTC	2 cut(s)	173, 451
BstMBI	GATC	3 cut(s)	171, 269, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 450
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	343, 416, 490, 491
BstSLI	GKGCMC	1 cut(s)	39
BstUI	CGCG	3 cut(s)	26, 192, 572
BstV1I	GCAGC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	472
BtgZI	GCGATG	4 cut(s)	106, 301, 633, 654
BtsCI	GGATG	2 cut(s)	279, 399
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	460, 568
Cac8I	GCNNGC	2 cut(s)	295, 469
CfoI	GCGC	7 cut(s)	14, 194, 264, 299, 467, 502, 572
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	5 cut(s)	35, 36, 100, 421, 476
Cfr9I	CCCGGG	1 cut(s)	491
CseI	GACGC	2 cut(s)	359, 433
Csp6I	GTAC	3 cut(s)	229, 379, 533
CviAII	CATG	6 cut(s)	9, 97, 337, 439, 487, 665
CviQI	GTAC	3 cut(s)	229, 379, 533
DdeI	CTNAG	3 cut(s)	15, 560, 707
DpnI	GATC	3 cut(s)	173, 271, 582
DpnII	GATC	3 cut(s)	171, 269, 580
DrdI	GACNNNNNNGTC	2 cut(s)	182, 584
DseDI	GACNNNNNNGTC	2 cut(s)	182, 584
EaeI	YGGCCR	2 cut(s)	223, 537
Eam1104I	CTCTTC	3 cut(s)	48, 224, 696
EarI	CTCTTC	3 cut(s)	48, 224, 696
Eco130I	CCWWGG	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	62
Eco24I	GRGCYC	2 cut(s)	39, 345
Eco31I	GGTCTC	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	56, 491
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	35, 421
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	39, 345
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	12, 100, 340, 442, 490, 668
FaiI	YATR	6 cut(s)	10, 98, 338, 440, 488, 666
FatI	CATG	6 cut(s)	8, 96, 336, 438, 486, 664
FauI	CCCGC	2 cut(s)	86, 676
FblI	GTMKAC	4 cut(s)	150, 306, 588, 612
Fnu4HI	GCNGC	2 cut(s)	195, 321
FokI	GGATG	2 cut(s)	266, 386
FriOI	GRGCYC	2 cut(s)	39, 345
Fsp4HI	GCNGC	2 cut(s)	195, 321
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	7 cut(s)	13, 193, 263, 298, 466, 501, 571
GluI	GCNGC	2 cut(s)	195, 321
GsuI	CTGGAG	2 cut(s)	242, 524
HaeII	RGCGCY	4 cut(s)	265, 300, 468, 503
HapII	CCGG	5 cut(s)	294, 345, 450, 492, 540
HgaI	GACGC	2 cut(s)	359, 433
HhaI	GCGC	7 cut(s)	14, 194, 264, 299, 467, 502, 572
Hin1I	GRCGYC	3 cut(s)	5, 351, 444
Hin1II	CATG	6 cut(s)	12, 100, 340, 442, 490, 668
Hin6I	GCGC	7 cut(s)	12, 192, 262, 297, 465, 500, 570
HinP1I	GCGC	7 cut(s)	12, 192, 262, 297, 465, 500, 570
HincII	GTYRAC	2 cut(s)	307, 589
HindII	GTYRAC	2 cut(s)	307, 589
HpaII	CCGG	5 cut(s)	294, 345, 450, 492, 540
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	8 cut(s)	151, 187, 231, 307, 533, 577, 589, 613
Hpy8I	GTNNAC	8 cut(s)	151, 187, 231, 307, 533, 577, 589, 613
Hpy99I	CGWCG	6 cut(s)	179, 308, 353, 365, 368, 590
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 450
HpyF3I	CTNAG	3 cut(s)	15, 560, 707
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	3 cut(s)	5, 351, 444
Hsp92II	CATG	6 cut(s)	12, 100, 340, 442, 490, 668
HspAI	GCGC	7 cut(s)	12, 192, 262, 297, 465, 500, 570
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	171, 269, 580
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	2 cut(s)	304, 340
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	3 cut(s)	90, 408, 670
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	173, 271, 582
MboI	GATC	3 cut(s)	171, 269, 580
MboII	GAAGA	3 cut(s)	35, 211, 713
MhlI	GDGCHC	2 cut(s)	39, 345
MroNI	GCCGGC	1 cut(s)	293
MroXI	GAANNNNTTC	2 cut(s)	134, 630
MspI	CCGG	5 cut(s)	294, 345, 450, 492, 540
MspR9I	CCNGG	4 cut(s)	345, 418, 492, 493
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	3 cut(s)	26, 192, 572
MwoI	GCNNNNNNNGC	2 cut(s)	329, 450
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	3 cut(s)	345, 492, 493
NdeII	GATC	3 cut(s)	171, 269, 580
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	6 cut(s)	12, 100, 340, 442, 490, 668
NlaIV	GGNNCC	3 cut(s)	37, 342, 422
NmeAIII	GCCGAG	3 cut(s)	151, 414, 615
PceI	AGGCCT	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	7 cut(s)	180, 357, 369, 378, 441, 585, 675
PdiI	GCCGGC	1 cut(s)	295
PdmI	GAANNNNTTC	2 cut(s)	134, 630
PflFI	GACNNNGTC	2 cut(s)	245, 518
PkrI	GCNGC	2 cut(s)	196, 322
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	3 cut(s)	37, 342, 422
PspOMI	GGGCCC	1 cut(s)	35
PspPI	GGNCC	5 cut(s)	35, 36, 100, 421, 476
PsyI	GACNNNGTC	2 cut(s)	245, 518
RsaI	GTAC	3 cut(s)	230, 380, 534
RsaNI	GTAC	3 cut(s)	229, 379, 533
SalI	GTCGAC	2 cut(s)	305, 587
SapI	GCTCTTC	1 cut(s)	696
SatI	GCNGC	2 cut(s)	195, 321
Sau3AI	GATC	3 cut(s)	171, 269, 580
Sau96I	GGNCC	5 cut(s)	35, 36, 100, 421, 476
ScrFI	CCNGG	4 cut(s)	345, 418, 492, 493
SduI	GDGCHC	2 cut(s)	39, 345
SfaNI	GCATC	3 cut(s)	90, 408, 670
SmaI	CCCGGG	1 cut(s)	493
SseBI	AGGCCT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	4 cut(s)	343, 416, 490, 491
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	4 cut(s)	174, 306, 360, 588
TatI	WGTACW	2 cut(s)	228, 532
TauI	GCSGC	1 cut(s)	323
TscAI	CASTG	2 cut(s)	460, 568
TseI	GCWGC	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	262
TspMI	CCCGGG	1 cut(s)	491
TspRI	CASTG	2 cut(s)	460, 568
Tth111I	GACNNNGTC	2 cut(s)	245, 518
XagI	CCTNNNNNAGG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	491
XmiI	GTMKAC	4 cut(s)	150, 306, 588, 612
XmnI	GAANNNNTTC	2 cut(s)	134, 630
XspI	CTAG	1 cut(s)	480
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.