Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

26056816 .. 26057296

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACTTCCAATCGTCGACCACCTCAACTTCTTCCATATCAACGCGCCAGAATAGAACCTGACAAGGCCGCCGCCGACTCCGAATCGATCCGCTCCCAAATCGAATTCCGAGGCTCCGATCCGTCATCATTCTCGTCAAGGTCGGTGACCCCACCGACCGCCTTGTCTGCCTACATGGAGCCCCGCGACGCCATCATCGACGGTGGCAACGAGTGGTACGAGAACCTTATCTCGATTGATGACCGGGTCGCAAGATCTACTTGGAGCTGGCGAAATCGGCAAGGACGAACCAATCCGATCGATGACGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

104

Amino Acids

11.81

Weight (kDa)

5.17

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	2 cut(s)	45, 186
AciI	CCGC	5 cut(s)	69, 72, 91, 159, 184
AclWI	GGATC	2 cut(s)	82, 113
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	218
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
AlwI	GGATC	2 cut(s)	82, 113
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	183
BccI	CCATC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	115, 180
BmrFI	CCNGG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	245
Bsa29I	ATCGAT	2 cut(s)	86, 300
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	109
BseCI	ATCGAT	2 cut(s)	86, 300
BseDI	CCNNGG	1 cut(s)	109
Bsh1236I	CGCG	2 cut(s)	45, 186
Bsh1285I	CGRYCG	2 cut(s)	159, 300
BshFI	GGCC	1 cut(s)	68
BshVI	ATCGAT	2 cut(s)	86, 300
BsiEI	CGRYCG	2 cut(s)	159, 300
BsiSI	CCGG	1 cut(s)	244
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	87, 118, 254, 297
BspACI	CCGC	5 cut(s)	69, 72, 91, 159, 184
BspANI	GGCC	1 cut(s)	68
BspDI	ATCGAT	2 cut(s)	86, 300
BspFNI	CGCG	2 cut(s)	45, 186
BspLI	GGNNCC	2 cut(s)	115, 180
BspPI	GGATC	2 cut(s)	82, 113
BsrBI	CCGCTC	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	87, 118, 254, 297
BssNI	GRCGYC	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	269
BstEII	GGTNACC	1 cut(s)	145
BstFNI	CGCG	2 cut(s)	45, 186
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	90, 121, 257, 300
BstMBI	GATC	4 cut(s)	87, 118, 254, 297
BstMCI	CGRYCG	2 cut(s)	159, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 277
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	2 cut(s)	45, 186
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
Bsu15I	ATCGAT	2 cut(s)	86, 300
BsuRI	GGCC	1 cut(s)	68
BsuTUI	ATCGAT	2 cut(s)	86, 300
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	47
ClaI	ATCGAT	2 cut(s)	86, 300
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	4 cut(s)	68, 114, 181, 267
CviKI_1	RGCY	4 cut(s)	68, 114, 181, 267
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	4 cut(s)	89, 120, 256, 299
DpnII	GATC	4 cut(s)	87, 118, 254, 297
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	37, 176
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	69, 72
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	69, 72
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	69, 72
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	77, 83
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	82, 110, 118, 297
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	3 cut(s)	18, 191, 203
HpyCH4III	ACNGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 277
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	87, 118, 254, 297
LmnI	GCTCC	4 cut(s)	98, 119, 178, 264
LpnPI	CCDG	4 cut(s)	61, 72, 253, 257
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	89, 120, 256, 299
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	4 cut(s)	87, 118, 254, 297
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	33, 104
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	45, 186
MwoI	GCNNNNNNNGC	2 cut(s)	167, 277
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	87, 118, 254, 297
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	115, 180
NmuCI	GTSAC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	4 cut(s)	195, 207, 216, 283
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	70, 73
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	115, 180
PsuI	RGATCY	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	15
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	4 cut(s)	87, 118, 254, 297
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	25, 61, 143, 228, 269
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	5 cut(s)	69, 72, 91, 159, 184
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	6 cut(s)	16, 86, 102, 198, 233, 300
TasI	AATT	1 cut(s)	104
TauI	GCSGC	2 cut(s)	71, 74
TfiI	GAWTC	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	111
Tth111I	GACNNNGTC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.