Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

2131279 .. 2132056

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGGCTTCCACCGCACTCTCCCGCATCGGCCTCACCATCATGGGCCAGAACCTCGCCCTCAACATCGCTGAGAAAGGCTTCCCCATCTCTGTCTACAACCGCACCTCCTCCAAGGTCGACGAGACCGTCCACCGCGCCACCACCGAGGGCGACCTCCCTCTCTCCGGCTACGCCCCCGATCCGTCATCATCCTCGTCAAGGCTGGTGCTCCCGTCAAGGTCGGAGAATGTCCTAGACATTGGAGTAGGCCTGGTGGGACCCCCCGGGCATGAGGCTAGGGCCGTGGCGAGCACCTTCCTCGCCGCCGGAGACGCCCATGCCGAGTTAGAGGAGGACCCTGGCAGAAGCCTCGTGGATGCGGCGCTCGATGTTCTCGTACCACTCGTTGTCGTCGTCGATGATGGTGTCGTCGAGCTCCATGTAAGCAGACAAGGCGGCGATGGTCTAGTCGACGTGAGCGCCGGCCTTGACGAGGATGATGACGGATCAGGGGCGCTGGAGAGAGAGGACGAAGTTTTTGGGGGTGTACTGGCCGGAGAGAGGGAGGTCGCCCTTGGTGGCGGCGCGGTGGACGGTCTCGTCGACCTTGGAGGAGGTGCGGTTGTAGACGGAGATGGGGAAGCCTTTCTCTGCGATGTTGAGGGCGAGGTTCTGGCCCATGACGGCAAGGCCGACGAGGCCGATGCGGGAGAGTGCGGTGGAGGCCTCCATTTGAGAAATGGGTTGGTGGTGAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

248

Amino Acids

24.99

Weight (kDa)

4.16

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	9 - 47	5.7e-09	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 581
AccI	GTMKAC	5 cut(s)	96, 120, 453, 585, 609
AccII	CGCG	2 cut(s)	138, 569
AclWI	GGATC	2 cut(s)	176, 496
AcoI	YGGCCR	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	381, 531
AfiI	CCNNNNNNNGG	4 cut(s)	167, 201, 475, 543
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	252, 340
AluBI	AGCT	2 cut(s)	418, 741
AluI	AGCT	2 cut(s)	418, 741
Alw21I	GWGCWC	3 cut(s)	213, 296, 420
Alw26I	GTCTC	3 cut(s)	119, 306, 584
AlwI	GGATC	2 cut(s)	176, 496
Ama87I	CYCGRG	1 cut(s)	266
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	2 cut(s)	80, 627
AspLEI	GCGC	5 cut(s)	140, 367, 464, 499, 569
AspS9I	GGNCC	5 cut(s)	46, 260, 282, 337, 658
AsuC2I	CCSGG	2 cut(s)	267, 268
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	260, 337
BanII	GRGCYC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	3 cut(s)	213, 296, 420
BccI	CCATC	5 cut(s)	47, 95, 398, 437, 611
BceAI	ACGGC	2 cut(s)	269, 682
BcgI	CGANNNNNNTGC	6 cut(s)	283, 317, 334, 368, 668, 702
BciT130I	CCWGG	2 cut(s)	254, 342
BcnI	CCSGG	2 cut(s)	267, 268
BcoDI	GTCTC	3 cut(s)	119, 306, 584
BfaI	CTAG	3 cut(s)	236, 279, 449
BfoI	RGCGCY	3 cut(s)	368, 465, 500
BglI	GCCNNNNNGGC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	306, 363, 439, 565
BlsI	GCNGC	4 cut(s)	307, 364, 440, 566
Bme1390I	CCNGG	4 cut(s)	254, 267, 268, 342
Bme18I	GGWCC	2 cut(s)	260, 337
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	5 cut(s)	46, 260, 282, 337, 658
BmiI	GGNNCC	3 cut(s)	261, 262, 339
BmrFI	CCNGG	4 cut(s)	254, 267, 268, 342
BmsI	GCATC	3 cut(s)	36, 349, 676
BpmI	CTGGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	267, 268
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	2 cut(s)	119, 584
BsaJI	CCNNGG	8 cut(s)	114, 147, 265, 266, 285, 340, 556, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 588, 618
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 201, 475, 543
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	254, 342
BseDI	CCNNGG	8 cut(s)	114, 147, 265, 266, 285, 340, 556, 589
BseGI	GGATG	3 cut(s)	191, 364, 484
BseLI	CCNNNNNNNGG	4 cut(s)	167, 201, 475, 543
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	3 cut(s)	100, 347, 609
Bsh1236I	CGCG	2 cut(s)	138, 569
BsiHKAI	GWGCWC	3 cut(s)	213, 296, 420
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	5 cut(s)	168, 267, 309, 465, 537
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	167, 201, 475, 543
BsmAI	GTCTC	3 cut(s)	119, 306, 584
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	273
Bso31I	GGTCTC	2 cut(s)	119, 584
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	213, 296, 420
Bsp143I	GATC	2 cut(s)	181, 488
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	138, 569
BspLI	GGNNCC	3 cut(s)	261, 262, 339
BspPI	GGATC	2 cut(s)	176, 496
BspTNI	GGTCTC	2 cut(s)	119, 584
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	8 cut(s)	114, 147, 265, 266, 285, 340, 556, 589
BssMI	GATC	2 cut(s)	181, 488
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	114, 556, 589
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	254, 342
Bst4CI	ACNGT	2 cut(s)	130, 578
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	292, 466
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	285
BstENI	CCTNNNNNAGG	2 cut(s)	199, 473
BstF5I	GGATG	3 cut(s)	191, 364, 484
BstFNI	CGCG	2 cut(s)	138, 569
BstH2I	RGCGCY	3 cut(s)	368, 465, 500
BstHHI	GCGC	5 cut(s)	140, 367, 464, 499, 569
BstKTI	GATC	2 cut(s)	184, 491
BstMAI	GTCTC	3 cut(s)	119, 306, 584
BstMBI	GATC	2 cut(s)	181, 488
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 314, 435, 680, 705
BstNI	CCWGG	2 cut(s)	254, 342
BstSCI	CCNGG	4 cut(s)	252, 265, 266, 340
BstUI	CGCG	2 cut(s)	138, 569
BtgI	CCRYGG	1 cut(s)	285
BtgZI	GCGATG	3 cut(s)	52, 456, 651
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	191, 364, 484
Cac8I	GCNNGC	2 cut(s)	292, 466
CfoI	GCGC	5 cut(s)	140, 367, 464, 499, 569
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	5 cut(s)	46, 260, 282, 337, 658
Cfr9I	CCCGGG	1 cut(s)	266
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	380, 530
CviAII	CATG	5 cut(s)	43, 272, 320, 422, 662
CviQI	GTAC	2 cut(s)	380, 530
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	183, 490
DpnII	GATC	2 cut(s)	181, 488
DrdI	GACNNNNNNGTC	2 cut(s)	128, 581
DseDI	GACNNNNNNGTC	2 cut(s)	128, 581
EaeI	YGGCCR	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	114, 556, 589
Eco147I	AGGCCT	2 cut(s)	252, 708
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	119, 584
Eco47I	GGWCC	2 cut(s)	260, 337
Eco53kI	GAGCTC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	2 cut(s)	199, 473
EcoO109I	RGGNCCY	2 cut(s)	260, 337
EcoRII	CCWGG	2 cut(s)	252, 340
EcoT14I	CCWWGG	3 cut(s)	114, 556, 589
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	114, 556, 589
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	5 cut(s)	46, 275, 323, 425, 665
FaiI	YATR	5 cut(s)	44, 273, 321, 423, 663
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	5 cut(s)	42, 271, 319, 421, 661
FauI	CCCGC	2 cut(s)	32, 682
FblI	GTMKAC	5 cut(s)	96, 120, 453, 585, 609
Fnu4HI	GCNGC	4 cut(s)	306, 363, 439, 565
FokI	GGATG	3 cut(s)	178, 371, 491
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	306, 363, 439, 565
FspBI	CTAG	3 cut(s)	236, 279, 449
GlaI	GCGC	5 cut(s)	139, 366, 463, 498, 568
GluI	GCNGC	4 cut(s)	306, 363, 439, 565
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	3 cut(s)	368, 465, 500
HapII	CCGG	5 cut(s)	168, 267, 309, 465, 537
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	5 cut(s)	140, 367, 464, 499, 569
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	5 cut(s)	46, 275, 323, 425, 665
Hin6I	GCGC	5 cut(s)	138, 365, 462, 497, 567
HinP1I	GCGC	5 cut(s)	138, 365, 462, 497, 567
HincII	GTYRAC	3 cut(s)	121, 454, 586
HindII	GTYRAC	3 cut(s)	121, 454, 586
HpaII	CCGG	5 cut(s)	168, 267, 309, 465, 537
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	8 cut(s)	97, 121, 133, 454, 530, 574, 586, 610
Hpy188I	TCNGA	1 cut(s)	226
Hpy8I	GTNNAC	8 cut(s)	97, 121, 133, 454, 530, 574, 586, 610
Hpy99I	CGWCG	7 cut(s)	125, 398, 401, 416, 458, 587, 680
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	130, 578
HpyCH4IV	ACGT	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 314, 435, 680, 705
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	46, 275, 323, 425, 665
HspAI	GCGC	5 cut(s)	138, 365, 462, 497, 567
KflI	GGGWCCC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	181, 488
LmnI	GCTCC	2 cut(s)	216, 423
LweI	GCATC	3 cut(s)	36, 349, 676
MaeI	CTAG	3 cut(s)	236, 279, 449
MaeII	ACGT	1 cut(s)	456
MalI	GATC	2 cut(s)	183, 490
MboI	GATC	2 cut(s)	181, 488
MhlI	GDGCHC	3 cut(s)	213, 296, 420
MmeI	TCCRAC	1 cut(s)	204
MroNI	GCCGGC	1 cut(s)	464
MroXI	GAANNNNTTC	2 cut(s)	80, 627
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	5 cut(s)	168, 267, 309, 465, 537
MspR9I	CCNGG	4 cut(s)	254, 267, 268, 342
MvaI	CCWGG	2 cut(s)	254, 342
MvnI	CGCG	2 cut(s)	138, 569
MwoI	GCNNNNNNNGC	5 cut(s)	14, 314, 435, 680, 705
NaeI	GCCGGC	1 cut(s)	466
NciI	CCSGG	2 cut(s)	267, 268
NdeII	GATC	2 cut(s)	181, 488
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	5 cut(s)	46, 275, 323, 425, 665
NlaIV	GGNNCC	3 cut(s)	261, 262, 339
NmeAIII	GCCGAG	1 cut(s)	349
PceI	AGGCCT	2 cut(s)	252, 708
PcsI	WCGNNNNNNNCGW	7 cut(s)	126, 321, 375, 384, 393, 582, 672
PdiI	GCCGGC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	80, 627
PkrI	GCNGC	4 cut(s)	307, 364, 440, 566
PpuMI	RGGWCCY	2 cut(s)	260, 337
Psp124BI	GAGCTC	1 cut(s)	420
Psp5II	RGGWCCY	2 cut(s)	260, 337
Psp6I	CCWGG	2 cut(s)	252, 340
PspGI	CCWGG	2 cut(s)	252, 340
PspN4I	GGNNCC	3 cut(s)	261, 262, 339
PspPI	GGNCC	5 cut(s)	46, 260, 282, 337, 658
PspPPI	RGGWCCY	2 cut(s)	260, 337
RsaI	GTAC	2 cut(s)	381, 531
RsaNI	GTAC	2 cut(s)	380, 530
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	420
SalI	GTCGAC	3 cut(s)	119, 452, 584
SatI	GCNGC	4 cut(s)	306, 363, 439, 565
Sau3AI	GATC	2 cut(s)	181, 488
Sau96I	GGNCC	5 cut(s)	46, 260, 282, 337, 658
ScrFI	CCNGG	4 cut(s)	254, 267, 268, 342
SduI	GDGCHC	3 cut(s)	213, 296, 420
SfaNI	GCATC	3 cut(s)	36, 349, 676
SfiI	GGCCNNNNNGGCC	1 cut(s)	680
SinI	GGWCC	2 cut(s)	260, 337
SmaI	CCCGGG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	41
SseBI	AGGCCT	2 cut(s)	252, 708
SspMI	CTAG	3 cut(s)	236, 279, 449
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	2 cut(s)	252, 708
StyD4I	CCNGG	4 cut(s)	252, 265, 266, 340
StyI	CCWWGG	3 cut(s)	114, 556, 589
TaaI	ACNGT	2 cut(s)	130, 578
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	6 cut(s)	120, 369, 399, 414, 453, 585
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	4 cut(s)	308, 365, 441, 567
TspGWI	ACGGA	3 cut(s)	174, 501, 627
TspMI	CCCGGG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	260, 337
XagI	CCTNNNNNAGG	2 cut(s)	199, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmaI	CCCGGG	1 cut(s)	266
XmiI	GTMKAC	5 cut(s)	96, 120, 453, 585, 609
XmnI	GAANNNNTTC	2 cut(s)	80, 627
XspI	CTAG	3 cut(s)	236, 279, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.