Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

17126074 .. 17126787

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGCCAGAGCCTCGCCCTCAACATCCCCAAGAAAGGCTTCCCCATCTCCGTCTACAACCGCACCTCCTCCAAGGTCGACGAGACTGTCCACCACGCCGCCACCGAGGGCGACCTCCCTCTCTCCAGCCAGTACACCCCGAAAGACTTCGTCCTCTCTCTCCAGCGCCCCCGATCCGTCATCATCCTCGTCAAGGCCGGTGCTCTTGTCGACCAGACCATCGCCGCCTTGTCTGCCTACATGGAGCCCGGCGACACCATCATCGACGGCGGCAACGAATGGTACGAGAACACCGAGTGCCGCATCCACGAGGCTTCTGCCAGGGGCTCCTCTACCTCGGCATGGGCGTCTTCAGCGGCGAGGAAGGCGCTCGCCACGACCCTAGCCTCATGCCCGGGGGGTCCCACTAGGCCTACTCCAATGTCCAAGACATTCTCCGGCCTTGACGGGAGCGCTGGCCTTGACGAGGATGATGACGGATCGGGGGCGCTGGAGAGAGAGGACGAAGTCTTTGGGGGTGTACTGGCCGGAGAGAGGGAGGTCGCCCTCGGTGGCGGCGCGGTGGACTGTCTCGTCAACCTTGGAGGAGTTGCGGTTGTAGACGGAGATGGGGAAGCCTTTCTCGGCGATGTTGAGGGCGAGGTTCTTGCCCATAACGGCGAGGCCGATGCGGGAGAGTGCGGTGGAGGCCTCGGGTTAGTGGTGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

238

Amino Acids

24.24

Weight (kDa)

4.44

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	1 - 136	2.6e-20	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	86, 572
AccI	GTMKAC	4 cut(s)	54, 78, 210, 600
AccII	CGCG	1 cut(s)	560
AclWI	GGATC	2 cut(s)	168, 487
AcoI	YGGCCR	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	134, 284, 522
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	5 cut(s)	35, 193, 342, 466, 534
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	711
AluI	AGCT	1 cut(s)	711
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	77, 575
AlwI	GGATC	2 cut(s)	168, 487
Ama87I	CYCGRG	2 cut(s)	394, 692
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	8 cut(s)	4, 195, 410, 439, 457, 525, 663, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	3 cut(s)	38, 146, 618
AspLEI	GCGC	5 cut(s)	168, 370, 455, 490, 560
AspS9I	GGNCC	2 cut(s)	4, 401
AsuC2I	CCSGG	3 cut(s)	249, 395, 396
AvaI	CYCGRG	2 cut(s)	394, 692
AvaII	GGWCC	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	249, 329
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	4 cut(s)	53, 227, 266, 602
BceAI	ACGGC	2 cut(s)	283, 673
BcgI	CGANNNNNNTGC	6 cut(s)	299, 333, 629, 650, 663, 684
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	3 cut(s)	249, 395, 396
BcoDI	GTCTC	2 cut(s)	77, 575
BfaI	CTAG	2 cut(s)	383, 408
BfoI	RGCGCY	4 cut(s)	169, 371, 456, 491
BisI	GCNGC	6 cut(s)	99, 225, 271, 301, 357, 556
BlsI	GCNGC	6 cut(s)	100, 226, 272, 302, 358, 557
Bme1390I	CCNGG	4 cut(s)	249, 322, 395, 396
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	394, 692
BmgT120I	GGNCC	2 cut(s)	4, 401
BmiI	GGNNCC	4 cut(s)	246, 328, 402, 403
BmrFI	CCNGG	4 cut(s)	249, 322, 395, 396
BmsI	GCATC	2 cut(s)	312, 658
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	3 cut(s)	109, 146, 512
BpuMI	CCSGG	3 cut(s)	249, 395, 396
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	9 cut(s)	72, 105, 321, 336, 394, 395, 547, 580, 691
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 579, 609
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 193, 342, 466, 534
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	130, 528
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	9 cut(s)	72, 105, 321, 336, 394, 395, 547, 580, 691
BseGI	GGATG	4 cut(s)	24, 183, 303, 475
BseLI	CCNNNNNNNGG	5 cut(s)	35, 193, 342, 466, 534
BseNI	ACTGG	2 cut(s)	130, 528
BseRI	GAGGAG	3 cut(s)	58, 319, 600
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	8 cut(s)	6, 197, 412, 441, 459, 527, 665, 690
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	2 cut(s)	394, 692
BsiSI	CCGG	5 cut(s)	198, 249, 395, 438, 528
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	5 cut(s)	35, 193, 342, 466, 534
BsmAI	GTCTC	2 cut(s)	77, 575
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	8 cut(s)	6, 197, 412, 441, 459, 527, 665, 690
BsoBI	CYCGRG	2 cut(s)	394, 692
Bsp1286I	GDGCHC	3 cut(s)	205, 249, 329
Bsp143I	GATC	2 cut(s)	173, 479
BspANI	GGCC	8 cut(s)	6, 197, 412, 441, 459, 527, 665, 690
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	4 cut(s)	246, 328, 402, 403
BspPI	GGATC	2 cut(s)	168, 487
BspQI	GCTCTTC	1 cut(s)	701
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	130, 528
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	9 cut(s)	72, 105, 321, 336, 394, 395, 547, 580, 691
BssMI	GATC	2 cut(s)	173, 479
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	2 cut(s)	72, 580
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	88, 569
Bst6I	CTCTTC	1 cut(s)	701
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	372, 457
BstENI	CCTNNNNNAGG	2 cut(s)	191, 464
BstF5I	GGATG	4 cut(s)	24, 183, 303, 475
BstFNI	CGCG	1 cut(s)	560
BstH2I	RGCGCY	4 cut(s)	169, 371, 456, 491
BstHHI	GCGC	5 cut(s)	168, 370, 455, 490, 560
BstKTI	GATC	2 cut(s)	176, 482
BstMAI	GTCTC	2 cut(s)	77, 575
BstMBI	GATC	2 cut(s)	173, 479
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 353, 365, 687
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	4 cut(s)	247, 320, 393, 394
BstUI	CGCG	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	8 cut(s)	6, 197, 412, 441, 459, 527, 665, 690
BtgZI	GCGATG	2 cut(s)	205, 642
BtsCI	GGATG	4 cut(s)	24, 183, 303, 475
Cac8I	GCNNGC	2 cut(s)	372, 457
CfoI	GCGC	5 cut(s)	168, 370, 455, 490, 560
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	4, 401
Cfr9I	CCCGGG	1 cut(s)	394
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	133, 283, 521
CviAII	CATG	3 cut(s)	241, 342, 390
CviQI	GTAC	3 cut(s)	133, 283, 521
DpnI	GATC	2 cut(s)	175, 481
DpnII	GATC	2 cut(s)	173, 479
DraIII	CACNNNGTG	1 cut(s)	297
DrdI	GACNNNNNNGTC	2 cut(s)	86, 572
DseDI	GACNNNNNNGTC	2 cut(s)	86, 572
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	72, 580
Eco147I	AGGCCT	2 cut(s)	412, 690
Eco24I	GRGCYC	2 cut(s)	249, 329
Eco47I	GGWCC	1 cut(s)	401
Eco47III	AGCGCT	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	2 cut(s)	394, 692
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 464
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	72, 580
EcoT38I	GRGCYC	2 cut(s)	249, 329
ErhI	CCWWGG	2 cut(s)	72, 580
FaeI	CATG	3 cut(s)	244, 345, 393
FaiI	YATR	4 cut(s)	242, 343, 391, 654
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	240, 341, 389
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	4 cut(s)	54, 78, 210, 600
Fnu4HI	GCNGC	6 cut(s)	99, 225, 271, 301, 357, 556
FokI	GGATG	4 cut(s)	11, 170, 290, 482
FriOI	GRGCYC	2 cut(s)	249, 329
Fsp4HI	GCNGC	6 cut(s)	99, 225, 271, 301, 357, 556
FspBI	CTAG	2 cut(s)	383, 408
GlaI	GCGC	5 cut(s)	167, 369, 454, 489, 559
GluI	GCNGC	6 cut(s)	99, 225, 271, 301, 357, 556
GsuI	CTGGAG	3 cut(s)	109, 146, 512
HaeII	RGCGCY	4 cut(s)	169, 371, 456, 491
HaeIII	GGCC	8 cut(s)	6, 197, 412, 441, 459, 527, 665, 690
HapII	CCGG	5 cut(s)	198, 249, 395, 438, 528
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	5 cut(s)	168, 370, 455, 490, 560
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	244, 345, 393
Hin6I	GCGC	5 cut(s)	166, 368, 453, 488, 558
HinP1I	GCGC	5 cut(s)	166, 368, 453, 488, 558
HincII	GTYRAC	3 cut(s)	79, 211, 577
HindII	GTYRAC	3 cut(s)	79, 211, 577
HpaII	CCGG	5 cut(s)	198, 249, 395, 438, 528
Hpy166II	GTNNAC	9 cut(s)	55, 79, 91, 135, 211, 521, 565, 577, 601
Hpy8I	GTNNAC	9 cut(s)	55, 79, 91, 135, 211, 521, 565, 577, 601
Hpy99I	CGWCG	2 cut(s)	83, 269
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	88, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 353, 365, 687
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	244, 345, 393
HspAI	GCGC	5 cut(s)	166, 368, 453, 488, 558
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	173, 479
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	3 cut(s)	244, 332, 450
LweI	GCATC	2 cut(s)	312, 658
MaeI	CTAG	2 cut(s)	383, 408
MalI	GATC	2 cut(s)	175, 481
MboI	GATC	2 cut(s)	173, 479
MboII	GAAGA	1 cut(s)	342
MhlI	GDGCHC	3 cut(s)	205, 249, 329
MroXI	GAANNNNTTC	3 cut(s)	38, 146, 618
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	5 cut(s)	198, 249, 395, 438, 528
MspR9I	CCNGG	4 cut(s)	249, 322, 395, 396
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	233, 353, 365, 687
NciI	CCSGG	3 cut(s)	249, 395, 396
NdeII	GATC	2 cut(s)	173, 479
NlaIII	CATG	3 cut(s)	244, 345, 393
NlaIV	GGNNCC	4 cut(s)	246, 328, 402, 403
NmeAIII	GCCGAG	2 cut(s)	317, 603
PceI	AGGCCT	2 cut(s)	412, 690
PciSI	GCTCTTC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	6 cut(s)	102, 273, 282, 291, 344, 663
PdmI	GAANNNNTTC	3 cut(s)	38, 146, 618
PflFI	GACNNNGTC	2 cut(s)	149, 506
PkrI	GCNGC	6 cut(s)	100, 226, 272, 302, 358, 557
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	4 cut(s)	246, 328, 402, 403
PspPI	GGNCC	2 cut(s)	4, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsyI	GACNNNGTC	2 cut(s)	149, 506
RsaI	GTAC	3 cut(s)	134, 284, 522
RsaNI	GTAC	3 cut(s)	133, 283, 521
SalI	GTCGAC	2 cut(s)	77, 209
SapI	GCTCTTC	1 cut(s)	701
SatI	GCNGC	6 cut(s)	99, 225, 271, 301, 357, 556
Sau3AI	GATC	2 cut(s)	173, 479
Sau96I	GGNCC	2 cut(s)	4, 401
ScrFI	CCNGG	4 cut(s)	249, 322, 395, 396
SduI	GDGCHC	3 cut(s)	205, 249, 329
SetI	ASST	8 cut(s)	68, 78, 117, 338, 543, 582, 645, 713
SfaNI	GCATC	2 cut(s)	312, 658
SinI	GGWCC	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	396
SseBI	AGGCCT	2 cut(s)	412, 690
SspMI	CTAG	2 cut(s)	383, 408
StuI	AGGCCT	2 cut(s)	412, 690
StyD4I	CCNGG	4 cut(s)	247, 320, 393, 394
StyI	CCWWGG	2 cut(s)	72, 580
TaaI	ACNGT	2 cut(s)	88, 569
TaqI	TCGA	3 cut(s)	78, 210, 264
TatI	WGTACW	2 cut(s)	132, 520
TauI	GCSGC	6 cut(s)	101, 227, 273, 303, 359, 558
TspGWI	ACGGA	4 cut(s)	40, 166, 492, 618
TspMI	CCCGGG	1 cut(s)	394
Tth111I	GACNNNGTC	2 cut(s)	149, 506
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	2 cut(s)	191, 464
XmaI	CCCGGG	1 cut(s)	394
XmiI	GTMKAC	4 cut(s)	54, 78, 210, 600
XmnI	GAANNNNTTC	3 cut(s)	38, 146, 618
XspI	CTAG	2 cut(s)	383, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.