RLG00000032486

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006383
Physical Location & Seq
Reverse (-)
15769024 .. 15772192
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032486

Sequence Viewer

Length: 318 bp
ATGACAAGTGGTATCAGAGCGGCCAAGCCAGGGCTAGTGGGAAGAACGCGTAGGCTAGTGCCGTCGAAGAGGCTCGACGGGAGGGGACTCGCCTCCGGGCATGAGACTAGGGCAGTGGAGGGCACCCTCCTCACCGCCGGAGACTCTCATGCCGAGGTAGAAGAGGCCCTTGGCGGAGGCGTCATGGATGCGGCGCTTGGTGCTCTTGTACCACTCGTTGCCGTAGTTGATGATGGCGTCGCGGGGCTCCATGTAGGGGGACAGGGCGGTGATGGTCTAGTCGACGGGGGCTCCAGCCTTGACGAGAATGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.3

Weight (kDa)

4.81

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 49, 242
AciI CCGC 6 cut(s) 20, 135, 174, 191, 242, 267
AcoI YGGCCR 1 cut(s) 21
AcyI GRCGYC 2 cut(s) 180, 237
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 30, 256
AflIII ACRYGT 1 cut(s) 47
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 98, 135
AoxI GGCC 2 cut(s) 21, 165
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 124, 281
BaeGI GKGCMC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 249, 293
Bbv12I GWGCWC 1 cut(s) 205
BccI CCATC 3 cut(s) 227, 266, 305
BceAI ACGGC 2 cut(s) 46, 206
BciT130I CCWGG 1 cut(s) 30
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 98, 135
BfaI CTAG 4 cut(s) 35, 56, 108, 278
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 2 cut(s) 21, 192
BlsI GCNGC 2 cut(s) 22, 193
Bme1390I CCNGG 2 cut(s) 30, 97
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 3 cut(s) 124, 248, 292
BmrFI CCNGG 2 cut(s) 30, 97
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 2 cut(s) 180, 237
BsaJI CCNNGG 3 cut(s) 29, 153, 169
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 256
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 29, 153, 169
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 30, 256
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 49, 242
BshFI GGCC 2 cut(s) 23, 167
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 96, 138
BslFI GGGAC 2 cut(s) 99, 273
BslI CCNNNNNNNGG 2 cut(s) 30, 256
BsmAI GTCTC 2 cut(s) 98, 135
BsmFI GGGAC 2 cut(s) 99, 273
BsnI GGCC 2 cut(s) 23, 167
Bsp1286I GDGCHC 4 cut(s) 125, 205, 249, 293
BspACI CCGC 6 cut(s) 20, 135, 174, 191, 242, 267
BspANI GGCC 2 cut(s) 23, 167
BspFNI CGCG 2 cut(s) 49, 242
BspLI GGNNCC 3 cut(s) 124, 248, 292
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 29, 153, 169
BssNI GRCGYC 2 cut(s) 180, 237
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 62, 156
BstACI GRCGYC 2 cut(s) 180, 237
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 2 cut(s) 49, 242
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 98, 135
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 95
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 2 cut(s) 49, 242
BsuRI GGCC 2 cut(s) 23, 167
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 2 cut(s) 169, 226
Csp6I GTAC 1 cut(s) 209
CviAII CATG 4 cut(s) 101, 149, 184, 251
CviQI GTAC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 62, 156
EarI CTCTTC 2 cut(s) 62, 156
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 249, 293
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 249, 293
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 4 cut(s) 104, 152, 187, 254
FaiI YATR 4 cut(s) 102, 150, 185, 252
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 2 cut(s) 99, 273
FatI CATG 4 cut(s) 100, 148, 183, 250
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 21, 192
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 2 cut(s) 249, 293
Fsp4HI GCNGC 2 cut(s) 21, 192
FspBI CTAG 4 cut(s) 35, 56, 108, 278
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 21, 192
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 2 cut(s) 23, 167
HapII CCGG 2 cut(s) 96, 138
HgaI GACGC 2 cut(s) 169, 226
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 2 cut(s) 180, 237
Hin1II CATG 4 cut(s) 104, 152, 187, 254
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 87, 143
HpaII CCGG 2 cut(s) 96, 138
HphI GGTGA 2 cut(s) 124, 281
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 4 cut(s) 67, 80, 242, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92I GRCGYC 2 cut(s) 180, 237
Hsp92II CATG 4 cut(s) 104, 152, 187, 254
HspAI GCGC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 252, 296
LpnPI CCDG 6 cut(s) 15, 42, 109, 151, 248, 307
LweI GCATC 1 cut(s) 178
MaeI CTAG 4 cut(s) 35, 56, 108, 278
MbiI CCGCTC 1 cut(s) 20
MboII GAAGA 3 cut(s) 54, 79, 173
MhlI GDGCHC 4 cut(s) 125, 205, 249, 293
MluI ACGCGT 1 cut(s) 47
MlyI GAGTC 2 cut(s) 81, 137
MnlI CCTC 9 cut(s) 63, 75, 103, 112, 137, 140, 148, 157, 170
MspI CCGG 2 cut(s) 96, 138
MspR9I CCNGG 2 cut(s) 30, 97
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 2 cut(s) 49, 242
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 97
NlaIII CATG 4 cut(s) 104, 152, 187, 254
NlaIV GGNNCC 3 cut(s) 124, 248, 292
NmeAIII GCCGAG 1 cut(s) 178
PkrI GCNGC 2 cut(s) 22, 193
PleI GAGTC 2 cut(s) 81, 137
PpsI GAGTC 2 cut(s) 81, 137
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 124, 248, 292
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SalI GTCGAC 1 cut(s) 281
SatI GCNGC 2 cut(s) 21, 192
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 2 cut(s) 81, 137
ScrFI CCNGG 2 cut(s) 30, 97
SduI GDGCHC 4 cut(s) 125, 205, 249, 293
SetI ASST 1 cut(s) 159
SfaNI GCATC 1 cut(s) 178
SsiI CCGC 6 cut(s) 20, 135, 174, 191, 242, 267
SspMI CTAG 4 cut(s) 35, 56, 108, 278
StyD4I CCNGG 2 cut(s) 28, 95
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 3 cut(s) 65, 75, 282
TauI GCSGC 2 cut(s) 23, 194
TscAI CASTG 1 cut(s) 120
TspRI CASTG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 4 cut(s) 35, 56, 108, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.