Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

63818667 .. 63819934

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCGTCTCGAAGCGCCTCCACCGGCTCCGGCCAATACTTTGTCAACCTCCGCCTCGGCACTCCTCCTCATCACCGACACCAACAACGATTTGACCAAACCATCGCCGCCTTGCCAACCTACATGAAGCCCGACGACGCCATTATCGACGGTGGCAACGAGTGGTACGAGAACACCAAGCGCGGCATCCACGACGCCTCCGCCAAGGGCCTCCTCTACCTCGGCATGGGAGTCTCCGACGGGGTTCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

6.9

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	29 - 82	1.1e-07	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	52, 108, 183, 201
AcoI	YGGCCR	1 cut(s)	31
AcyI	GRCGYC	2 cut(s)	138, 195
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	12, 238
AoxI	GGCC	2 cut(s)	31, 208
AspLEI	GCGC	2 cut(s)	17, 183
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	65
BccI	CCATC	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	12, 238
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	2 cut(s)	108, 184
BlsI	GCNGC	2 cut(s)	109, 185
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	138, 195
BsaJI	CCNNGG	3 cut(s)	55, 204, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	55, 204, 220
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	3 cut(s)	54, 57, 203
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	33, 210
BsiSI	CCGG	2 cut(s)	24, 30
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	12, 238
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	33, 210
BspACI	CCGC	4 cut(s)	52, 108, 183, 201
BspANI	GGCC	2 cut(s)	33, 210
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	55, 204, 220
BssNI	GRCGYC	2 cut(s)	138, 195
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	138, 195
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 183
BstMAI	GTCTC	2 cut(s)	12, 238
BstUI	CGCG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	33, 210
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	186
CfoI	GCGC	2 cut(s)	17, 183
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	2 cut(s)	146, 203
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	124, 226
CviJI	RGCY	4 cut(s)	27, 33, 130, 210
CviKI_1	RGCY	4 cut(s)	27, 33, 130, 210
CviQI	GTAC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	31
EciI	GGCGGA	2 cut(s)	41, 190
Eco130I	CCWWGG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	127, 229
FaiI	YATR	2 cut(s)	125, 227
FatI	CATG	2 cut(s)	123, 225
Fnu4HI	GCNGC	2 cut(s)	108, 184
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	108, 184
GlaI	GCGC	2 cut(s)	16, 182
GluI	GCNGC	2 cut(s)	108, 184
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	33, 210
HapII	CCGG	2 cut(s)	24, 30
HgaI	GACGC	2 cut(s)	146, 203
HhaI	GCGC	2 cut(s)	17, 183
Hin1I	GRCGYC	2 cut(s)	138, 195
Hin1II	CATG	2 cut(s)	127, 229
Hin6I	GCGC	2 cut(s)	15, 181
HinP1I	GCGC	2 cut(s)	15, 181
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	24, 30
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	5 cut(s)	137, 140, 152, 197, 242
HpyCH4III	ACNGT	1 cut(s)	152
Hsp92I	GRCGYC	2 cut(s)	138, 195
Hsp92II	CATG	2 cut(s)	127, 229
HspAI	GCGC	2 cut(s)	15, 181
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	37, 43
LweI	GCATC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	28, 59, 65, 75, 78, 208, 221, 224, 230
MspI	CCGG	2 cut(s)	24, 30
MvnI	CGCG	1 cut(s)	183
NlaIII	CATG	2 cut(s)	127, 229
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	2 cut(s)	36, 201
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 156, 165
PkrI	GCNGC	2 cut(s)	109, 185
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	2 cut(s)	108, 184
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	240
SetI	ASST	3 cut(s)	51, 122, 222
SfaNI	GCATC	1 cut(s)	195
SsiI	CCGC	4 cut(s)	52, 108, 183, 201
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	10, 147
TauI	GCSGC	2 cut(s)	110, 186
TspDTI	ATGAA	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.