Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

14494166 .. 14494441

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG171800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATGATTCTCGTCAAGACAGACGCCCCCGTCGACCAAACCATTGCCGCCCTTTCCGCCTACATGGAGCCCCGCGACGCCATCATCGACGGCGGCAATGAGTGGTATGAGAGCACCGAGCGCTGCATCCACGAGGCCACTACCAAGGGCCTCCTCTACCTCAGCATGGGAGTCTCCTGCTACGACGAGGGCGCCCGCCACTGCCCCAGTCTCATGCCCGGCGGGTTTCACCAGGCGTATTCTAACATACGTGTTAAAGAACATCGGCGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

5.72

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 83	1.2e-15	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	75
AciI	CCGC	7 cut(s)	48, 57, 73, 93, 196, 222, 268
AcyI	GRCGYC	3 cut(s)	24, 78, 192
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	178, 215
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	135, 148
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	123, 194
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	178, 215
BfoI	RGCGCY	2 cut(s)	124, 195
BisI	GCNGC	3 cut(s)	48, 94, 124
BlsI	GCNGC	3 cut(s)	49, 95, 125
Bme1390I	CCNGG	2 cut(s)	219, 233
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	69, 193
BmrFI	CCNGG	2 cut(s)	219, 233
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	251
BsaHI	GRCGYC	3 cut(s)	24, 78, 192
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	2 cut(s)	42, 103
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	42, 103
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	137, 150
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	178, 215
BsnI	GGCC	2 cut(s)	137, 150
Bsp1286I	GDGCHC	2 cut(s)	72, 116
BspACI	CCGC	7 cut(s)	48, 57, 73, 93, 196, 222, 268
BspANI	GGCC	2 cut(s)	137, 150
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	69, 193
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	42, 103
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	144
BssNI	GRCGYC	3 cut(s)	24, 78, 192
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	233
BstACI	GRCGYC	3 cut(s)	24, 78, 192
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	124, 195
BstHHI	GCGC	2 cut(s)	123, 194
BstMAI	GTCTC	2 cut(s)	178, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 120
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	217, 231
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	137, 150
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	2 cut(s)	123, 194
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	2 cut(s)	32, 86
CviAII	CATG	3 cut(s)	64, 166, 214
CviJI	RGCY	3 cut(s)	70, 137, 150
CviKI_1	RGCY	3 cut(s)	70, 137, 150
DdeI	CTNAG	1 cut(s)	161
DinI	GGCGCC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	67, 169, 217
FaiI	YATR	5 cut(s)	65, 108, 167, 215, 248
FatI	CATG	3 cut(s)	63, 165, 213
FauI	CCCGC	3 cut(s)	80, 203, 215
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	48, 94, 124
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	48, 94, 124
GlaI	GCGC	2 cut(s)	122, 193
GluI	GCNGC	3 cut(s)	48, 94, 124
HaeII	RGCGCY	2 cut(s)	124, 195
HaeIII	GGCC	2 cut(s)	137, 150
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	32, 86
HhaI	GCGC	2 cut(s)	123, 194
Hin1I	GRCGYC	3 cut(s)	24, 78, 192
Hin1II	CATG	3 cut(s)	67, 169, 217
Hin6I	GCGC	2 cut(s)	121, 192
HinP1I	GCGC	2 cut(s)	121, 192
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	7, 171
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	4 cut(s)	35, 80, 92, 188
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 120
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	3 cut(s)	24, 78, 192
Hsp92II	CATG	3 cut(s)	67, 169, 217
HspAI	GCGC	2 cut(s)	121, 192
KasI	GGCGCC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	190, 218, 220, 232, 245
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	72, 116
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	127, 161, 164, 170, 181
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	219, 233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	56, 120
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	219
NlaIII	CATG	3 cut(s)	67, 169, 217
NlaIV	GGNNCC	2 cut(s)	69, 193
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 84
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	49, 95, 125
PleI	GAGTC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	69, 193
PspPI	GGNCC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	48, 94, 124
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	219, 233
SduI	GDGCHC	2 cut(s)	72, 116
SetI	ASST	2 cut(s)	162, 253
SfaNI	GCATC	1 cut(s)	135
SfoI	GGCGCC	1 cut(s)	193
SsiI	CCGC	7 cut(s)	48, 57, 73, 93, 196, 222, 268
SspDI	GGCGCC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	217, 231
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	33, 87
TauI	GCSGC	2 cut(s)	50, 96
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	123
TspRI	CASTG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.