Rh2DG566800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006383
Physical Location & Seq
Reverse (-)
79591886 .. 79592215
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG566800.1

Sequence Viewer

Length: 330 bp
ATGTTCTTCAACACATCTGTTGGAATATGCCTGGTGAAACCCGCGGGGCATGAAACTGGGGCCGTGGCGGGCGCCCTCGTCGCCGCCGGAGACTCCCATGCCGAGTTAGAGGAGGCCCTTGGCGGAGGCCTCGTGGATGCGGCGCTCGGTGCTCTCGTACCACTCATTGCCGTCGATGATGGCGTCGCCGGGCTCCATGTAGGCCGAAAGGGCGGTGATGGTTCCGCCAGTTTCACCATGGTTCCATCTCTAATTGAGTTCACGACTTCCTCAAATTCACCAAACTCCGAACCCCAAATTAAGCTAACCCATCAATTCAGACCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

10.91

Weight (kDa)

4.88

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 44
AciI CCGC 8 cut(s) 42, 44, 68, 84, 123, 140, 213, 225
AcsI RAATTY 1 cut(s) 274
AcyI GRCGYC 2 cut(s) 72, 183
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 4 cut(s) 60, 114, 127, 202
ApoI RAATTY 1 cut(s) 274
AspLEI GCGC 2 cut(s) 74, 145
AspS9I GGNCC 2 cut(s) 60, 115
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 4 cut(s) 46, 226, 227, 270
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 4 cut(s) 173, 212, 253, 318
BceAI ACGGC 2 cut(s) 47, 155
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 84
BfoI RGCGCY 2 cut(s) 75, 146
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 84, 141
BlsI GCNGC 2 cut(s) 85, 142
Bme1390I CCNGG 2 cut(s) 32, 190
BmgT120I GGNCC 2 cut(s) 60, 115
BmiI GGNNCC 5 cut(s) 61, 73, 194, 223, 243
BmrFI CCNGG 2 cut(s) 32, 190
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 190
BsaHI GRCGYC 2 cut(s) 72, 183
BsaJI CCNNGG 4 cut(s) 42, 63, 118, 237
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 2 cut(s) 61, 228
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 42, 63, 118, 237
BseGI GGATG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 61, 228
BseRI GAGGAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 4 cut(s) 62, 116, 129, 204
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 87, 189
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 4 cut(s) 62, 116, 129, 204
Bsp1286I GDGCHC 2 cut(s) 154, 195
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 8 cut(s) 42, 44, 68, 84, 123, 140, 213, 225
BspANI GGCC 4 cut(s) 62, 116, 129, 204
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 5 cut(s) 61, 73, 194, 223, 243
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 2 cut(s) 61, 228
BssECI CCNNGG 4 cut(s) 42, 63, 118, 237
BssNI GRCGYC 2 cut(s) 72, 183
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 118, 237
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 324
BstACI GRCGYC 2 cut(s) 72, 183
BstC8I GCNNGC 1 cut(s) 70
BstDSI CCRYGG 3 cut(s) 42, 63, 237
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 2 cut(s) 75, 146
BstHHI GCGC 2 cut(s) 74, 145
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 80, 149, 210
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 30, 188
BstUI CGCG 1 cut(s) 44
BsuRI GGCC 4 cut(s) 62, 116, 129, 204
BtgI CCRYGG 3 cut(s) 42, 63, 237
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 74, 145
Cfr13I GGNCC 2 cut(s) 60, 115
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 158
CviAII CATG 4 cut(s) 50, 98, 197, 238
CviJI RGCY 6 cut(s) 62, 116, 129, 193, 204, 304
CviKI_1 RGCY 6 cut(s) 62, 116, 129, 193, 204, 304
CviQI GTAC 1 cut(s) 158
DinI GGCGCC 1 cut(s) 73
EciI GGCGGA 2 cut(s) 138, 214
Eco130I CCWWGG 2 cut(s) 118, 237
Eco147I AGGCCT 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 118, 237
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 118, 237
FaeI CATG 4 cut(s) 53, 101, 200, 241
FaiI YATR 5 cut(s) 28, 51, 99, 198, 239
FatI CATG 4 cut(s) 49, 97, 196, 237
FauI CCCGC 3 cut(s) 37, 49, 61
Fnu4HI GCNGC 2 cut(s) 84, 141
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 84, 141
GlaI GCGC 2 cut(s) 73, 144
GluI GCNGC 2 cut(s) 84, 141
HaeII RGCGCY 2 cut(s) 75, 146
HaeIII GGCC 4 cut(s) 62, 116, 129, 204
HapII CCGG 2 cut(s) 87, 189
HgaI GACGC 1 cut(s) 172
HhaI GCGC 2 cut(s) 74, 145
Hin1I GRCGYC 2 cut(s) 72, 183
Hin1II CATG 4 cut(s) 53, 101, 200, 241
Hin6I GCGC 2 cut(s) 72, 143
HinP1I GCGC 2 cut(s) 72, 143
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 87, 189
HphI GGTGA 4 cut(s) 46, 226, 227, 270
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 289, 320
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 4 cut(s) 83, 176, 188, 328
HpyCH4III ACNGT 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 149, 210
Hsp92I GRCGYC 2 cut(s) 72, 183
Hsp92II CATG 4 cut(s) 53, 101, 200, 241
HspAI GCGC 2 cut(s) 72, 143
KasI GGCGCC 1 cut(s) 71
KspI CCGCGG 1 cut(s) 45
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 17, 42, 44, 100, 202, 241
LweI GCATC 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 154, 195
MluCI AATT 4 cut(s) 252, 274, 297, 314
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 6 cut(s) 86, 103, 106, 119, 140, 280
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 87, 189
MspR9I CCNGG 2 cut(s) 32, 190
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 80, 149, 210
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 190
NcoI CCATGG 1 cut(s) 237
NlaIII CATG 4 cut(s) 53, 101, 200, 241
NlaIV GGNNCC 5 cut(s) 61, 73, 194, 223, 243
NmeAIII GCCGAG 1 cut(s) 127
PceI AGGCCT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 180
PkrI GCNGC 2 cut(s) 85, 142
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 5 cut(s) 61, 73, 194, 223, 243
PspPI GGNCC 2 cut(s) 60, 115
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 84, 141
Sau96I GGNCC 2 cut(s) 60, 115
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 32, 190
SduI GDGCHC 2 cut(s) 154, 195
SetI ASST 1 cut(s) 306
SfaNI GCATC 1 cut(s) 127
SfoI GGCGCC 1 cut(s) 73
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
Sse9I AATT 4 cut(s) 252, 274, 297, 314
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 8 cut(s) 42, 44, 68, 84, 123, 140, 213, 225
SspDI GGCGCC 1 cut(s) 71
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 30, 188
StyI CCWWGG 2 cut(s) 118, 237
TaaI ACNGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 174
TasI AATT 4 cut(s) 252, 274, 297, 314
TauI GCSGC 2 cut(s) 86, 143
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 66
XapI RAATTY 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.