Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

23466284 .. 23467560

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1098800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAGCTTCACCAACTCTGTCCCGCATAGGCCTGGCAGGCCTCGCTGTCATGGGCCAAAACCTCACCCTTAACATTGCCGAGAAAGGGTTTCCGATCTCCATCTATAACCGCACCACCTCTAAGCAAGGGCGAAGCTACAGAGGCGCAAGGAGGGGCGTCCGCCCCTCCCCTCGTCGGAAATCTAGCCTTGGAGCGATGTACAACCCTCGCGATTTTGCGCTCTCCATCGAACGACCTAGATCTGTTATTAATATTATCCTCGTCAAAGCTGAAGCTCCGGTTGATCAGACCATCGTCGCCCTCTCCGCCTACATGGAGCCTGGCGATGCAATCATCAACGGTGGAAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

119

Amino Acids

12.76

Weight (kDa)

10.4

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	9 - 117	2e-14	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	25, 112, 163, 309
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	87, 177
AjnI	CCWGG	2 cut(s)	33, 322
AluBI	AGCT	4 cut(s)	8, 138, 272, 278
AluI	AGCT	4 cut(s)	8, 138, 272, 278
AoxI	GGCC	3 cut(s)	31, 40, 55
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	149, 223
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	3, 58
BccI	CCATC	3 cut(s)	110, 236, 302
BciT130I	CCWGG	2 cut(s)	35, 324
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	2 cut(s)	186, 240
BfmI	CTRYAG	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	35, 324
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	35, 324
BmsI	GCATC	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 177
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	35, 324
BseDI	CCNNGG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	87, 177
BseMI	GCAATG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	33, 42, 57
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	87, 177
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	3 cut(s)	33, 42, 57
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	96, 242, 286
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	4 cut(s)	25, 112, 163, 309
BspANI	GGCC	3 cut(s)	33, 42, 57
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	96, 242, 286
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	35, 324
Bst4CI	ACNGT	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	149, 223
BstKTI	GATC	3 cut(s)	99, 245, 289
BstMBI	GATC	3 cut(s)	96, 242, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 44, 144, 308
BstNI	CCWGG	2 cut(s)	35, 324
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	33, 322
BstSFI	CTRYAG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	33, 42, 57
BtgZI	GCGATG	2 cut(s)	212, 342
BtuMI	TCGCGA	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	2 cut(s)	149, 223
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	52, 316
CviJI	RGCY	9 cut(s)	8, 33, 42, 57, 138, 189, 272, 278, 322
CviKI_1	RGCY	9 cut(s)	8, 33, 42, 57, 138, 189, 272, 278, 322
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	98, 244, 288
DpnII	GATC	3 cut(s)	96, 242, 286
EciI	GGCGGA	2 cut(s)	152, 298
Eco130I	CCWWGG	1 cut(s)	190
Eco147I	AGGCCT	2 cut(s)	33, 42
Eco57I	CTGAAG	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	33, 322
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	55, 319
FaiI	YATR	4 cut(s)	29, 53, 108, 317
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	51, 315
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	286
FspBI	CTAG	2 cut(s)	186, 240
GlaI	GCGC	2 cut(s)	148, 222
HaeIII	GGCC	3 cut(s)	33, 42, 57
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	149, 223
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	55, 319
Hin6I	GCGC	2 cut(s)	147, 221
HinP1I	GCGC	2 cut(s)	147, 221
HindIII	AAGCTT	1 cut(s)	6
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	3, 58
Hpy188I	TCNGA	3 cut(s)	96, 180, 291
Hpy188III	TCNNGA	1 cut(s)	212
Hpy99I	CGWCG	2 cut(s)	180, 302
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 44, 144, 308
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	55, 319
HspAI	GCGC	2 cut(s)	147, 221
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	96, 242, 286
LmnI	GCTCC	3 cut(s)	194, 283, 319
LpnPI	CCDG	6 cut(s)	20, 24, 47, 294, 309, 336
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	186, 240
MalI	GATC	3 cut(s)	98, 244, 288
MboI	GATC	3 cut(s)	96, 242, 286
MflI	RGATCY	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	2 cut(s)	72, 252
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	35, 324
MvaI	CCWGG	2 cut(s)	35, 324
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	39, 44, 144, 308
NdeII	GATC	3 cut(s)	96, 242, 286
NlaIII	CATG	2 cut(s)	55, 319
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	106
NruI	TCGCGA	1 cut(s)	213
PceI	AGGCCT	2 cut(s)	33, 42
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	33, 322
PspGI	CCWGG	2 cut(s)	33, 322
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	72, 252
Sau3AI	GATC	3 cut(s)	96, 242, 286
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	35, 324
SetI	ASST	7 cut(s)	10, 66, 122, 140, 241, 274, 280
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	139
SfiI	GGCCNNNNNGGCC	1 cut(s)	39
SseBI	AGGCCT	2 cut(s)	33, 42
SsiI	CCGC	4 cut(s)	25, 112, 163, 309
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	186, 240
StuI	AGGCCT	2 cut(s)	33, 42
StyD4I	CCNGG	2 cut(s)	33, 322
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	231
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	72, 252
Tru9I	TTAA	2 cut(s)	72, 252
VspI	ATTAAT	1 cut(s)	252
XspI	CTAG	2 cut(s)	186, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.