Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

11622335 .. 11623502

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCTGGATAGTCTCCTCCTCAGCGCTCTCCCTCTCCTCCTTCAATCCATTCAAGTCCGCGATGTTCTTCAACACATCTGTTGGAATACGCCTGGTGAAACCCGCCTGGCATGAGACTGGGGCCATGGCGAGCGCCTTCATCGCCTTTGGAGACTCCCATGCAGAGGTAGAGGAGGCCCTTGGCAGAGGCCTCGTGGATGCCGCGCTCGGTGTTCTCGTACCACTCAATTGCTGCTGTCGATGGCTACTGCCGGTCAGCCAAGGAGTTCTTCTGGTTCGCTTCTCAGGCCGGTCTATAGATATTGGCAGGTTCTTCGTTTCGCTTCTCTTTAATTTGGTGAAGTTCTCTACCGGATTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.03

Weight (kDa)

8.63

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AccII	CGCG	2 cut(s)	62, 206
AciI	CCGC	3 cut(s)	60, 105, 204
AfaI	GTAC	1 cut(s)	222
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	46, 55, 73
AjnI	CCWGG	3 cut(s)	5, 93, 107
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
Alw26I	GTCTC	3 cut(s)	19, 110, 147
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	5 cut(s)	3, 123, 177, 190, 289
ApeKI	GCWGC	1 cut(s)	234
AspLEI	GCGC	3 cut(s)	28, 137, 208
AspS9I	GGNCC	2 cut(s)	123, 178
AsuHPI	GGTGA	2 cut(s)	109, 352
BauI	CACGAG	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	237
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 298, 332
BciT130I	CCWGG	3 cut(s)	7, 95, 109
BcoDI	GTCTC	3 cut(s)	19, 110, 147
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	2 cut(s)	29, 138
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	2 cut(s)	204, 235
BlsI	GCNGC	2 cut(s)	205, 236
Bme1390I	CCNGG	3 cut(s)	7, 95, 109
BmgT120I	GGNCC	2 cut(s)	123, 178
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	7, 95, 109
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	126, 181, 262
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	2 cut(s)	253, 291
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	7, 95, 109
BseDI	CCNNGG	3 cut(s)	126, 181, 262
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	36, 300
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	4 cut(s)	7, 10, 28, 188
BseXI	GCAGC	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	62, 206
BshFI	GGCC	5 cut(s)	5, 125, 179, 192, 291
BsiSI	CCGG	3 cut(s)	254, 292, 354
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	3 cut(s)	19, 110, 147
BsnI	GGCC	5 cut(s)	5, 125, 179, 192, 291
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	3 cut(s)	60, 105, 204
BspANI	GGCC	5 cut(s)	5, 125, 179, 192, 291
BspCNI	CTCAG	2 cut(s)	35, 299
BspFNI	CGCG	2 cut(s)	62, 206
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	300
BsrFI	RCCGGY	2 cut(s)	253, 291
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	2 cut(s)	253, 291
BssECI	CCNNGG	3 cut(s)	126, 181, 262
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	3 cut(s)	126, 181, 262
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	7, 95, 109
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	22, 286
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	62, 206
BstH2I	RGCGCY	2 cut(s)	29, 138
BstHHI	GCGC	3 cut(s)	28, 137, 208
BstMAI	GTCTC	3 cut(s)	19, 110, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 288
BstNI	CCWGG	3 cut(s)	7, 95, 109
BstSCI	CCNGG	3 cut(s)	5, 93, 107
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	62, 206
BstV1I	GCAGC	1 cut(s)	221
BsuRI	GGCC	5 cut(s)	5, 125, 179, 192, 291
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	2 cut(s)	77, 127
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	3 cut(s)	28, 137, 208
Cfr10I	RCCGGY	2 cut(s)	253, 291
Cfr13I	GGNCC	2 cut(s)	123, 178
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	113, 127, 161
CviJI	RGCY	7 cut(s)	5, 125, 179, 192, 247, 261, 291
CviKI_1	RGCY	7 cut(s)	5, 125, 179, 192, 247, 261, 291
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	22, 286
Eco130I	CCWWGG	3 cut(s)	126, 181, 262
Eco147I	AGGCCT	1 cut(s)	192
Eco47III	AGCGCT	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	5, 93, 107
EcoT14I	CCWWGG	3 cut(s)	126, 181, 262
ErhI	CCWWGG	3 cut(s)	126, 181, 262
FaeI	CATG	3 cut(s)	116, 130, 164
FaiI	YATR	4 cut(s)	114, 128, 162, 299
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	3 cut(s)	112, 126, 160
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	204, 235
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	204, 235
GlaI	GCGC	3 cut(s)	27, 136, 207
GluI	GCNGC	2 cut(s)	204, 235
HaeII	RGCGCY	2 cut(s)	29, 138
HaeIII	GGCC	5 cut(s)	5, 125, 179, 192, 291
HapII	CCGG	3 cut(s)	254, 292, 354
HhaI	GCGC	3 cut(s)	28, 137, 208
Hin1II	CATG	3 cut(s)	116, 130, 164
Hin6I	GCGC	3 cut(s)	26, 135, 206
HinP1I	GCGC	3 cut(s)	26, 135, 206
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	3 cut(s)	254, 292, 354
HphI	GGTGA	2 cut(s)	109, 352
HpyAV	CCTTC	2 cut(s)	52, 148
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 288
HpyF3I	CTNAG	2 cut(s)	22, 286
Hsp92II	CATG	3 cut(s)	116, 130, 164
HspAI	GCGC	3 cut(s)	26, 135, 206
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	61, 263, 307
MfeI	CAATTG	1 cut(s)	229
MluCI	AATT	2 cut(s)	229, 334
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	9 cut(s)	28, 31, 44, 49, 160, 166, 169, 182, 203
MseI	TTAA	2 cut(s)	333, 364
MspI	CCGG	3 cut(s)	254, 292, 354
MspR9I	CCNGG	3 cut(s)	7, 95, 109
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	7, 95, 109
MvnI	CGCG	2 cut(s)	62, 206
MwoI	GCNNNNNNNGC	2 cut(s)	143, 288
NcoI	CCATGG	1 cut(s)	126
NlaIII	CATG	3 cut(s)	116, 130, 164
NlaIV	GGNNCC	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	205, 236
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	5, 93, 107
PspGI	CCWGG	3 cut(s)	5, 93, 107
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	123, 178
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	333, 364
SatI	GCNGC	2 cut(s)	204, 235
Sau96I	GGNCC	2 cut(s)	123, 178
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	7, 95, 109
SetI	ASST	2 cut(s)	171, 314
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	229, 334
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	60, 105, 204
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	5, 93, 107
StyI	CCWWGG	3 cut(s)	126, 181, 262
TaqI	TCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	229, 334
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	333, 364
Tru9I	TTAA	2 cut(s)	333, 364
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.