Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

84611052 .. 84611327

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG622600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATGATTCTCGTCAAGACAGGCGCCCCCGTCGACCAGAGCATCGCTGCCTTTTCAGCCCACATGGAGCTCTGCGATGCCATCATCGACGGTGGCAATGAGTGGTACGAGAGCACCGAGCGCTGCATCCACGAGGCCTCCGCCAAGGGCCTCCTCTACCTCAGCATGGGAGTCTCCAACGACGACGAGGGCACCGGCGACGACCTCAGTCTCATGCCCGGCTGGTTTCACCAGGCGTATTCCAACAGACGTACTGAAGAACATCGGCGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

4.7

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 81	5.5e-10	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 191
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	2 cut(s)	141, 268
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	107, 253
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	72, 116
Alw26I	GTCTC	2 cut(s)	178, 215
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	135, 148
ApeKI	GCWGC	2 cut(s)	47, 123
AspLEI	GCGC	2 cut(s)	26, 123
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	194
BanI	GGYRCC	2 cut(s)	23, 191
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	72, 116
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	34, 110
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	178, 215
BfoI	RGCGCY	2 cut(s)	27, 124
BisI	GCNGC	2 cut(s)	48, 124
BlsI	GCNGC	2 cut(s)	49, 125
Bme1390I	CCNGG	2 cut(s)	219, 233
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	25, 193
BmrFI	CCNGG	2 cut(s)	219, 233
BmsI	GCATC	3 cut(s)	51, 67, 135
BoxI	GACNNNNGTC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	175, 220
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	34, 110
BshFI	GGCC	2 cut(s)	137, 150
BshNI	GGYRCC	2 cut(s)	23, 191
BsiHKAI	GWGCWC	2 cut(s)	72, 116
BsiSI	CCGG	2 cut(s)	195, 219
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	178, 215
BsnI	GGCC	2 cut(s)	137, 150
Bsp1286I	GDGCHC	3 cut(s)	72, 116, 194
BspACI	CCGC	2 cut(s)	141, 268
BspANI	GGCC	2 cut(s)	137, 150
BspCNI	CTCAG	2 cut(s)	174, 219
BspLI	GGNNCC	2 cut(s)	25, 193
BspT107I	GGYRCC	2 cut(s)	23, 191
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	161, 206
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	2 cut(s)	27, 124
BstHHI	GCGC	2 cut(s)	26, 123
BstMAI	GTCTC	2 cut(s)	178, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 120
BstNI	CCWGG	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	217, 231
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	34, 110
BsuRI	GGCC	2 cut(s)	137, 150
BtgZI	GCGATG	2 cut(s)	28, 90
BtsCI	GGATG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	26, 123
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	106, 252
CviAII	CATG	3 cut(s)	64, 166, 214
CviJI	RGCY	5 cut(s)	59, 70, 137, 150, 222
CviKI_1	RGCY	5 cut(s)	59, 70, 137, 150, 222
CviQI	GTAC	2 cut(s)	106, 252
DdeI	CTNAG	2 cut(s)	161, 206
DinI	GGCGCC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	67, 169, 217
FaiI	YATR	3 cut(s)	65, 167, 215
FatI	CATG	3 cut(s)	63, 165, 213
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	48, 124
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	48, 124
GlaI	GCGC	2 cut(s)	25, 122
GluI	GCNGC	2 cut(s)	48, 124
HaeII	RGCGCY	2 cut(s)	27, 124
HaeIII	GGCC	2 cut(s)	137, 150
HapII	CCGG	2 cut(s)	195, 219
HhaI	GCGC	2 cut(s)	26, 123
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	67, 169, 217
Hin6I	GCGC	2 cut(s)	24, 121
HinP1I	GCGC	2 cut(s)	24, 121
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	7, 171
HpaII	CCGG	2 cut(s)	195, 219
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	5 cut(s)	35, 92, 185, 188, 203
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 120
HpyF3I	CTNAG	2 cut(s)	161, 206
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	67, 169, 217
HspAI	GCGC	2 cut(s)	24, 121
KasI	GGCGCC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	6, 50, 208, 208, 218, 232, 245
Lsp1109I	GCAGC	2 cut(s)	34, 110
LweI	GCATC	3 cut(s)	51, 67, 135
MaeII	ACGT	1 cut(s)	250
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	3 cut(s)	72, 116, 194
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	201, 267
MnlI	CCTC	7 cut(s)	127, 148, 161, 164, 170, 181, 215
MspI	CCGG	2 cut(s)	195, 219
MspR9I	CCNGG	2 cut(s)	219, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	56, 120
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	219
NlaIII	CATG	3 cut(s)	67, 169, 217
NlaIV	GGNNCC	2 cut(s)	25, 193
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	49, 125
PleI	GAGTC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	179
PshAI	GACNNNNGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	25, 193
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	2 cut(s)	107, 253
RsaNI	GTAC	2 cut(s)	106, 252
SacI	GAGCTC	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	48, 124
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	219, 233
SduI	GDGCHC	3 cut(s)	72, 116, 194
SetI	ASST	4 cut(s)	72, 162, 207, 253
SfaNI	GCATC	3 cut(s)	51, 67, 135
SfoI	GGCGCC	1 cut(s)	25
SgrAI	CRCCGGYG	1 cut(s)	194
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	141, 268
SspDI	GGCGCC	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	217, 231
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	33, 87
TfiI	GAWTC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	47, 123
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.