Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

24730493 .. 24730735

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG253900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTTTTTGCCCCCAAAGACTTCGTCCTCTCTCTCCAGCGCCCCAGATCCGTCATCATTCTCATCAAGGCCGGTGCCCCCGTCAACCAAACGATCGCCGCCCTGTCCGCCTACATGGAGCCTGACGACATCATTGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGACGCCTCCACTAAGGGCCTCCTCTACCTCGGCATGGGAGTCTCCGGCGGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

80

Amino Acids

8.62

Weight (kDa)

5.12

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	5 - 80	1.2e-13	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	5 cut(s)	99, 108, 141, 172, 228
AclWI	GGATC	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	69, 196
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	2 cut(s)	42, 171
AspS9I	GGNCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	226
BfoI	RGCGCY	2 cut(s)	43, 172
BisI	GCNGC	3 cut(s)	99, 142, 172
BlsI	GCNGC	3 cut(s)	100, 143, 173
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	76, 120
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	71, 198
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	72, 225
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	71, 198
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	47, 93
BspACI	CCGC	5 cut(s)	99, 108, 141, 172, 228
BspANI	GGCC	2 cut(s)	71, 198
BspLI	GGNNCC	2 cut(s)	76, 120
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	47, 93
BssNI	GRCGYC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	174
BstH2I	RGCGCY	2 cut(s)	43, 172
BstHHI	GCGC	2 cut(s)	42, 171
BstKTI	GATC	2 cut(s)	50, 96
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	47, 93
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	71, 198
BtsCI	GGATG	1 cut(s)	174
CfoI	GCGC	2 cut(s)	42, 171
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	115, 214
CviJI	RGCY	3 cut(s)	71, 121, 198
CviKI_1	RGCY	3 cut(s)	71, 121, 198
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	49, 95
DpnII	GATC	2 cut(s)	47, 93
EciI	GGCGGA	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	196
FaeI	CATG	2 cut(s)	118, 217
FaiI	YATR	2 cut(s)	116, 215
FatI	CATG	2 cut(s)	114, 213
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	3 cut(s)	99, 142, 172
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	99, 142, 172
GlaI	GCGC	2 cut(s)	41, 170
GluI	GCNGC	3 cut(s)	99, 142, 172
GsuI	CTGGAG	1 cut(s)	20
HaeII	RGCGCY	2 cut(s)	43, 172
HaeIII	GGCC	2 cut(s)	71, 198
HapII	CCGG	2 cut(s)	72, 225
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	42, 171
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	118, 217
Hin6I	GCGC	2 cut(s)	40, 169
HinP1I	GCGC	2 cut(s)	40, 169
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	72, 225
Hpy166II	GTNNAC	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	118, 217
HspAI	GCGC	2 cut(s)	40, 169
Kzo9I	GATC	2 cut(s)	47, 93
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	50, 58, 85, 116, 135, 222, 238
LweI	GCATC	1 cut(s)	183
MalI	GATC	2 cut(s)	49, 95
MboI	GATC	2 cut(s)	47, 93
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	38, 196, 209, 212, 218
MspI	CCGG	2 cut(s)	72, 225
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	47, 93
NlaIII	CATG	2 cut(s)	118, 217
NlaIV	GGNNCC	2 cut(s)	76, 120
NmeAIII	GCCGAG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 153, 162
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	100, 143, 173
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	76, 120
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	3 cut(s)	99, 142, 172
Sau3AI	GATC	2 cut(s)	47, 93
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	183
SsiI	CCGC	5 cut(s)	99, 108, 141, 172, 228
TauI	GCSGC	3 cut(s)	101, 144, 174
TspGWI	ACGGA	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.