Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

54284025 .. 54285052

Gene Structure 1028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGTCTCAAGCGCCTCTATCGGCTCCGGCCAATACTTCGTCGACCTTCGCCTCGGCACTCCTCGTCGCCGACACCAGCAACGATTTGGTCTGGCTCCGCTTCTCCACCTCCCATGGCGATGATGTTTGCCCCCAAAGACTTCCTCCTCTCTCTCCAGCGCCCCAGATCCGTCATCATTCTCATCAAGACCAGACCATCGCCGCCCTGTCAGCCTACATAGAGACGGGCGACGCCATCATTGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCACATCCACGACGCCTCCGCCAAGGGCCTCCTCCACCTCGGCATGGGAGTCTCCAACAGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

116

Amino Acids

12.37

Weight (kDa)

5.46

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	59 - 111	3.4e-07	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	4 cut(s)	100, 204, 249, 297
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	234, 291
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	12, 218, 334
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	30, 304
AspLEI	GCGC	3 cut(s)	16, 163, 279
AspS9I	GGNCC	1 cut(s)	304
BccI	CCATC	2 cut(s)	206, 245
BceAI	ACGGC	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	12, 218, 334
BfoI	RGCGCY	3 cut(s)	17, 164, 280
BisI	GCNGC	2 cut(s)	204, 250
BlsI	GCNGC	2 cut(s)	205, 251
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	27, 98
BpmI	CTGGAG	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	234, 291
BsaJI	CCNNGG	4 cut(s)	54, 115, 300, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	54, 115, 300, 316
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseRI	GAGGAG	3 cut(s)	53, 138, 299
BshFI	GGCC	2 cut(s)	32, 306
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	12, 218, 334
BsmBI	CGTCTC	2 cut(s)	12, 218
BsnI	GGCC	2 cut(s)	32, 306
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	4 cut(s)	100, 204, 249, 297
BspANI	GGCC	2 cut(s)	32, 306
BspLI	GGNNCC	2 cut(s)	27, 98
BspPI	GGATC	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	54, 115, 300, 316
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	2 cut(s)	234, 291
BssT1I	CCWWGG	2 cut(s)	115, 300
BstACI	GRCGYC	2 cut(s)	234, 291
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	3 cut(s)	17, 164, 280
BstHHI	GCGC	3 cut(s)	16, 163, 279
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	3 cut(s)	12, 218, 334
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	32, 306
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	135, 184
BtsCI	GGATG	1 cut(s)	282
CfoI	GCGC	3 cut(s)	16, 163, 279
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	2 cut(s)	242, 299
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	116, 322
CviJI	RGCY	5 cut(s)	26, 32, 97, 215, 306
CviKI_1	RGCY	5 cut(s)	26, 32, 97, 215, 306
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	115, 300
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	115, 300
ErhI	CCWWGG	2 cut(s)	115, 300
Esp3I	CGTCTC	2 cut(s)	12, 218
FaeI	CATG	2 cut(s)	119, 325
FaiI	YATR	3 cut(s)	117, 221, 323
FatI	CATG	2 cut(s)	115, 321
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	204, 250
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	204, 250
GlaI	GCGC	3 cut(s)	15, 162, 278
GluI	GCNGC	2 cut(s)	204, 250
GsuI	CTGGAG	1 cut(s)	141
HaeII	RGCGCY	3 cut(s)	17, 164, 280
HaeIII	GGCC	2 cut(s)	32, 306
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	2 cut(s)	242, 299
HhaI	GCGC	3 cut(s)	16, 163, 279
Hin1I	GRCGYC	2 cut(s)	234, 291
Hin1II	CATG	2 cut(s)	119, 325
Hin6I	GCGC	3 cut(s)	14, 161, 277
HinP1I	GCGC	3 cut(s)	14, 161, 277
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	4 cut(s)	46, 71, 236, 293
HpyAV	CCTTC	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92I	GRCGYC	2 cut(s)	234, 291
Hsp92II	CATG	2 cut(s)	119, 325
HspAI	GCGC	3 cut(s)	14, 161, 277
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	31, 102
LpnPI	CCDG	9 cut(s)	42, 79, 91, 171, 179, 206, 221, 322, 330
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MflI	RGATCY	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	119, 325
NlaIV	GGNNCC	2 cut(s)	27, 98
NmeAIII	GCCGAG	2 cut(s)	35, 297
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 261, 270
PkrI	GCNGC	2 cut(s)	205, 251
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	27, 98
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	43
SatI	GCNGC	2 cut(s)	204, 250
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	336
SetI	ASST	3 cut(s)	50, 113, 318
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SsiI	CCGC	4 cut(s)	100, 204, 249, 297
StyI	CCWWGG	2 cut(s)	115, 300
TaqI	TCGA	1 cut(s)	44
TauI	GCSGC	2 cut(s)	206, 252
TspGWI	ACGGA	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.