Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

56600904 .. 56601146

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGACGATTCTCGTCAAGGCAGGCGCCCCCGTCGACCAGACCATCGCCGCCCTTTCCGCCTACATGGAGCCCGGCCACGCCATCATCGACGGCAACAATGAGTGGTACGAGAGCACCGAGCGCTGCATCGACGAGGCCTCTTCCACCTCTGCATGGGAGTCTTCGGTGACGACGAGGGCGCCCGCCACGCCTCAGTCTCATCCCCGGCGGGTTTCACCAGGCGTATTCCAACAGACGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

80

Amino Acids

8.62

Weight (kDa)

4.86

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 178
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	4 cut(s)	48, 57, 183, 208
AcoI	YGGCCR	1 cut(s)	73
AcyI	GRCGYC	2 cut(s)	24, 179
AfaI	GTAC	1 cut(s)	107
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	201
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	73, 135
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	3 cut(s)	26, 123, 181
AsuC2I	CCSGG	2 cut(s)	72, 205
AsuHPI	GGTGA	2 cut(s)	178, 207
BanI	GGYRCC	2 cut(s)	23, 178
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	50, 89
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	72, 205
BcoDI	GTCTC	1 cut(s)	201
BfoI	RGCGCY	3 cut(s)	27, 124, 182
BisI	GCNGC	2 cut(s)	48, 124
BlsI	GCNGC	2 cut(s)	49, 125
Bme1390I	CCNGG	3 cut(s)	72, 205, 219
BmgBI	CACGTC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	25, 69, 180
BmrFI	CCNGG	3 cut(s)	72, 205, 219
BmsI	GCATC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	72, 205
BsaHI	GRCGYC	2 cut(s)	24, 179
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	75, 137
BshNI	GGYRCC	2 cut(s)	23, 178
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	72, 205
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	75, 137
Bsp1286I	GDGCHC	2 cut(s)	72, 116
BspACI	CCGC	4 cut(s)	48, 57, 183, 208
BspANI	GGCC	2 cut(s)	75, 137
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	25, 69, 180
BspT107I	GGYRCC	2 cut(s)	23, 178
BssECI	CCNNGG	1 cut(s)	203
BssNI	GRCGYC	2 cut(s)	24, 179
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	2 cut(s)	24, 179
BstC8I	GCNNGC	2 cut(s)	22, 183
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	3 cut(s)	27, 124, 182
BstHHI	GCGC	3 cut(s)	26, 123, 181
BstMAI	GTCTC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 120, 187
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	70, 203, 217
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	75, 137
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	22, 183
CfoI	GCGC	3 cut(s)	26, 123, 181
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	64, 153
CviJI	RGCY	3 cut(s)	70, 75, 137
CviKI_1	RGCY	3 cut(s)	70, 75, 137
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	192
DinI	GGCGCC	2 cut(s)	25, 180
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	2 cut(s)	25, 180
EheI	GGCGCC	2 cut(s)	25, 180
FaeI	CATG	2 cut(s)	67, 156
FaiI	YATR	2 cut(s)	65, 154
FatI	CATG	2 cut(s)	63, 152
FauI	CCCGC	2 cut(s)	190, 201
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	48, 124
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	48, 124
GlaI	GCGC	3 cut(s)	25, 122, 180
GluI	GCNGC	2 cut(s)	48, 124
HaeII	RGCGCY	3 cut(s)	27, 124, 182
HaeIII	GGCC	2 cut(s)	75, 137
HapII	CCGG	2 cut(s)	72, 205
HhaI	GCGC	3 cut(s)	26, 123, 181
Hin1I	GRCGYC	2 cut(s)	24, 179
Hin1II	CATG	2 cut(s)	67, 156
Hin6I	GCGC	3 cut(s)	24, 121, 179
HinP1I	GCGC	3 cut(s)	24, 121, 179
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	7, 158
HpaII	CCGG	2 cut(s)	72, 205
HphI	GGTGA	2 cut(s)	178, 207
Hpy166II	GTNNAC	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	4 cut(s)	35, 92, 134, 175
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	126, 152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 120, 187
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	2 cut(s)	24, 179
Hsp92II	CATG	2 cut(s)	67, 156
HspAI	GCGC	3 cut(s)	24, 121, 179
KasI	GGCGCC	2 cut(s)	23, 178
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	6, 50, 85, 204, 218, 231
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	132, 153
MhlI	GDGCHC	2 cut(s)	72, 116
Mly113I	GGCGCC	2 cut(s)	24, 179
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	127, 148, 157, 168, 201
MspI	CCGG	2 cut(s)	72, 205
MspR9I	CCNGG	3 cut(s)	72, 205, 219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	56, 120, 187
NarI	GGCGCC	2 cut(s)	24, 179
NciI	CCSGG	2 cut(s)	72, 205
NlaIII	CATG	2 cut(s)	67, 156
NlaIV	GGNNCC	3 cut(s)	25, 69, 180
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 114, 170
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	49, 125
PleI	GAGTC	1 cut(s)	166
PluTI	GGCGCC	2 cut(s)	27, 182
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	25, 69, 180
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	48, 124
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	72, 205, 219
SduI	GDGCHC	2 cut(s)	72, 116
SetI	ASST	2 cut(s)	149, 239
SfaNI	GCATC	1 cut(s)	135
SfoI	GGCGCC	2 cut(s)	25, 180
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	48, 57, 183, 208
SspDI	GGCGCC	2 cut(s)	23, 178
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	70, 203, 217
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	33, 87, 129
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	7
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.