Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

18558959 .. 18559201

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTTTTTGCCACCAAAGACTTCGTCCTCTCTCTCCAGCACCCCAGATCCGTCATCATTCTCGTCAAGGCCGGCGCCCCCGTCGACCAGACCATCGCCGCCCTGTCCGCCTACATGGAGCCCGACGACATCATCAACGGCGGTAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGACGCCTCCACCAAGGGCCTCCTCTACCTCGGCATGGGAGTCTCCGGTGGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

80

Amino Acids

8.59

Weight (kDa)

5.07

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	6 - 80	3.7e-13	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	4 cut(s)	99, 108, 141, 172
AclWI	GGATC	1 cut(s)	42
AcyI	GRCGYC	2 cut(s)	75, 183
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	69, 196
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	2 cut(s)	77, 171
AspS9I	GGNCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	123
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	226
BfoI	RGCGCY	2 cut(s)	78, 172
BisI	GCNGC	2 cut(s)	99, 172
BlsI	GCNGC	2 cut(s)	100, 173
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	76, 120
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	75, 183
BsaJI	CCNNGG	2 cut(s)	192, 208
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	192, 208
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	71, 198
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	72, 225
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	71, 198
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	4 cut(s)	99, 108, 141, 172
BspANI	GGCC	2 cut(s)	71, 198
BspLI	GGNNCC	2 cut(s)	76, 120
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	192, 208
BssMI	GATC	1 cut(s)	47
BssNI	GRCGYC	2 cut(s)	75, 183
BssT1I	CCWWGG	1 cut(s)	192
BstACI	GRCGYC	2 cut(s)	75, 183
BstC8I	GCNNGC	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	174
BstH2I	RGCGCY	2 cut(s)	78, 172
BstHHI	GCGC	2 cut(s)	77, 171
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	71, 198
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	2 cut(s)	77, 171
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	115, 214
CviJI	RGCY	3 cut(s)	71, 121, 198
CviKI_1	RGCY	3 cut(s)	71, 121, 198
CviQI	GTAC	1 cut(s)	154
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	118, 217
FaiI	YATR	2 cut(s)	116, 215
FatI	CATG	2 cut(s)	114, 213
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	99, 172
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	99, 172
GlaI	GCGC	2 cut(s)	76, 170
GluI	GCNGC	2 cut(s)	99, 172
GsuI	CTGGAG	1 cut(s)	20
HaeII	RGCGCY	2 cut(s)	78, 172
HaeIII	GGCC	2 cut(s)	71, 198
HapII	CCGG	2 cut(s)	72, 225
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	77, 171
Hin1I	GRCGYC	2 cut(s)	75, 183
Hin1II	CATG	2 cut(s)	118, 217
Hin6I	GCGC	2 cut(s)	75, 169
HinP1I	GCGC	2 cut(s)	75, 169
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	72, 225
Hpy166II	GTNNAC	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	3 cut(s)	86, 128, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92I	GRCGYC	2 cut(s)	75, 183
Hsp92II	CATG	2 cut(s)	118, 217
HspAI	GCGC	2 cut(s)	75, 169
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	50, 58, 85, 101, 116, 222, 238
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	38, 196, 209, 212, 218
MroNI	GCCGGC	1 cut(s)	71
MspI	CCGG	2 cut(s)	72, 225
MwoI	GCNNNNNNNGC	1 cut(s)	107
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	75
NdeII	GATC	1 cut(s)	47
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	118, 217
NlaIV	GGNNCC	2 cut(s)	76, 120
NmeAIII	GCCGAG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 153, 162
PdiI	GCCGGC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	100, 173
PleI	GAGTC	1 cut(s)	227
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	76, 120
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	99, 172
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	76
SsiI	CCGC	4 cut(s)	99, 108, 141, 172
SspDI	GGCGCC	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	84
TauI	GCSGC	2 cut(s)	101, 174
TspGWI	ACGGA	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.