FvH4_1g26372

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006383
Physical Location & Seq
Forward (+)
18227084 .. 18227591
508 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26372.t1

Sequence Viewer

Length: 399 bp
ATGGAAAAATTAAATCATGTCAGTGTAAGATATGAAATCTTGTTGAAGAGACGCACCACCTCCAATGTCAACGAGATCGTCTTCACGTCGTCAACAAAGACAACCTCCTTCTCTGATCAGTACAGCCCCAAAGACTTCATCCTTTATCTTCAGGGCCCCAAATCCGTCATCATTCTCATCGACCCGATCCGGCCCGATTGGCAATTGAGATTTAGACATGAAGCTCTCTGGTGCCGTAGAAGCCCTCGTCAGAGTAAGAATACGGTCGCCATCACTCTTATGGTAACGTCAGTGACATGGAGCTGTGAGAGGGTTGTGGTAGTGGCCAGCGCCAGCGGAGACGCTGAGGACCCTGGAGTGCATGATTTTGGAGGAGGGGTGGAAGAAGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.0

Weight (kDa)

5.92

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 231
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 224, 303
AluI AGCT 2 cut(s) 224, 303
Alw26I GTCTC 2 cut(s) 43, 333
AlwI GGATC 1 cut(s) 181
AoxI GGCC 3 cut(s) 154, 191, 324
ApaI GGGCCC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 4 cut(s) 154, 155, 192, 349
AvaII GGWCC 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 43, 333
BfoI RGCGCY 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 349
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 4 cut(s) 154, 155, 192, 349
BmiI GGNNCC 4 cut(s) 156, 157, 233, 351
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 156, 193, 326
BshNI GGYRCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 43, 333
BsmBI CGTCTC 2 cut(s) 43, 333
BsnI GGCC 3 cut(s) 156, 193, 326
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 75, 115, 186
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 156, 193, 326
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 156, 157, 233, 351
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 3 cut(s) 75, 115, 186
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 328, 334
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 3 cut(s) 78, 118, 189
BstMAI GTCTC 2 cut(s) 43, 333
BstMBI GATC 3 cut(s) 75, 115, 186
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 199, 240
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 73
BsuRI GGCC 3 cut(s) 156, 193, 326
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 28, 297
Cac8I GCNNGC 2 cut(s) 328, 334
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 4 cut(s) 154, 155, 192, 349
CseI GACGC 2 cut(s) 60, 350
Csp6I GTAC 1 cut(s) 121
CviAII CATG 4 cut(s) 17, 218, 297, 362
CviJI RGCY 7 cut(s) 126, 156, 193, 224, 243, 303, 326
CviKI_1 RGCY 7 cut(s) 126, 156, 193, 224, 243, 303, 326
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 345
DpnI GATC 3 cut(s) 77, 117, 188
DpnII GATC 3 cut(s) 75, 115, 186
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 134
EcoO109I RGGNCCY 3 cut(s) 154, 155, 349
EcoRII CCWGG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 158
Esp3I CGTCTC 2 cut(s) 43, 333
FaeI CATG 4 cut(s) 20, 221, 300, 365
FaiI YATR 6 cut(s) 18, 33, 219, 281, 298, 363
FatI CATG 4 cut(s) 16, 217, 296, 361
FbaI TGATCA 1 cut(s) 115
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 158
GlaI GCGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 3 cut(s) 156, 193, 326
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 60, 350
HhaI GCGC 1 cut(s) 332
Hin1II CATG 4 cut(s) 20, 221, 300, 365
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 2 cut(s) 70, 93
HindII GTYRAC 2 cut(s) 70, 93
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 70, 93
Hpy188I TCNGA 2 cut(s) 115, 252
Hpy8I GTNNAC 2 cut(s) 70, 93
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 86, 287
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 240
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 86, 287
Hsp92II CATG 4 cut(s) 20, 221, 300, 365
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 75, 115, 186
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 137, 203, 214, 339, 340, 346, 366
MaeII ACGT 2 cut(s) 86, 287
MaeIII GTNAC 2 cut(s) 283, 292
MalI GATC 3 cut(s) 77, 117, 188
MboI GATC 3 cut(s) 75, 115, 186
MboII GAAGA 5 cut(s) 58, 73, 140, 395, 398
MfeI CAATTG 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 2 cut(s) 8, 203
MluNI TGGCCA 1 cut(s) 326
MnlI CCTC 7 cut(s) 70, 115, 255, 303, 340, 365, 368
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 21, 278
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 199, 240
NdeII GATC 3 cut(s) 75, 115, 186
NlaIII CATG 4 cut(s) 20, 221, 300, 365
NlaIV GGNNCC 4 cut(s) 156, 157, 233, 351
NmuCI GTSAC 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 156, 157, 233, 351
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 4 cut(s) 154, 155, 192, 349
PspPPI RGGWCCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 2 cut(s) 21, 278
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 3 cut(s) 75, 115, 186
Sau96I GGNCC 4 cut(s) 154, 155, 192, 349
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 62, 89, 107, 226, 290, 305
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 21, 278
Sse9I AATT 2 cut(s) 8, 203
SsiI CCGC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 89, 290
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 8, 203
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 2 cut(s) 28, 297
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 48, 127, 234
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 28, 297
VpaK11BI GGWCC 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.