Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

25031819 .. 25032518

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTTGGTGGTTCAGATTATTCTAGGATAGAAAAATTAAATCATGTCAGTGTAGGATATGAAATCTTGTTGAAGAGATGTTATATACATAATATGTGTAGGATTTCAACGACGATCATATCGTATCTCTTGACCAACCCTCAATTTCTCTCCCCTCTCTCGCCTCAATTTCTCTCGATCAAATCTTGCTTCTCCATCTCCTTCTACATACGCACCACCTCCAATGTCAACGAGATCGTTTTCATGCAGTCAACGAAGACAACCTCCTTCTCCGATCAGTACAGCCCCAAAGACTTCATCCTTTATCTCCTGGGCCCCAGATCCGTCATCATTCTCGTCGACCCGATCCGGCATGATTGGCAATTGAGATCTAGACGCGAAGATCTCTGGTGCTGTAGAAGCCCTCGTCAGAGTAAGAATACGATCGCCATCATTCTAATGGTAAAGTCAGCGACATGGAGCTGCGAAAGGGTTGTGGTCATGGCCAGCACCGACAGAGACGTTGAGGACCTTGGAGTGCATGGTTTTGGAGAAGGGGTGGAAGAAGATGATGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

187

Amino Acids

21.39

Weight (kDa)

6.42

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	378
AclWI	GGATC	2 cut(s)	315, 340
AcoI	YGGCCR	1 cut(s)	483
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	73, 108
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	315, 340
AoxI	GGCC	2 cut(s)	313, 483
ApaI	GGGCCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	313, 314, 508
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	2 cut(s)	203, 437
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	24, 372
BfmI	CTRYAG	1 cut(s)	394
BglII	AGATCT	2 cut(s)	368, 382
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	313, 314, 508
BmiI	GGNNCC	2 cut(s)	315, 316
BmrFI	CCNGG	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	310, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	310, 511
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	315, 485
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	315, 485
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
BspANI	GGCC	2 cut(s)	315, 485
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	315, 316
BspPI	GGATC	2 cut(s)	315, 340
BssECI	CCNNGG	2 cut(s)	310, 511
BssMI	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	9 cut(s)	117, 180, 237, 277, 323, 348, 371, 385, 426
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 399
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	3 cut(s)	320, 368, 382
BstYI	RGATCY	3 cut(s)	320, 368, 382
BsuRI	GGCC	2 cut(s)	315, 485
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	313, 314, 508
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	6 cut(s)	44, 244, 353, 456, 481, 521
CviJI	RGCY	5 cut(s)	285, 315, 402, 462, 485
CviKI_1	RGCY	5 cut(s)	285, 315, 402, 462, 485
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	9 cut(s)	116, 179, 236, 276, 322, 347, 370, 384, 425
DpnII	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	508
EcoO109I	RGGNCCY	2 cut(s)	314, 508
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	6 cut(s)	47, 247, 356, 459, 484, 524
FatI	CATG	6 cut(s)	43, 243, 352, 455, 480, 520
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	463
FspBI	CTAG	2 cut(s)	24, 372
GluI	GCNGC	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	315, 485
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	6 cut(s)	47, 247, 356, 459, 484, 524
HincII	GTYRAC	3 cut(s)	229, 252, 340
HindII	GTYRAC	3 cut(s)	229, 252, 340
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	229, 252, 340
Hpy188I	TCNGA	3 cut(s)	16, 274, 411
Hpy188III	TCNNGA	3 cut(s)	130, 175, 372
Hpy8I	GTNNAC	3 cut(s)	229, 252, 340
Hpy99I	CGWCG	2 cut(s)	115, 341
HpyAV	CCTTC	3 cut(s)	211, 277, 527
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	247, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 399
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	6 cut(s)	47, 247, 356, 459, 484, 524
Kzo9I	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	6 cut(s)	296, 323, 331, 362, 373, 499
Lsp1109I	GCAGC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	24, 372
MaeII	ACGT	1 cut(s)	501
MalI	GATC	9 cut(s)	116, 179, 236, 276, 322, 347, 370, 384, 425
MboI	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
MboII	GAAGA	5 cut(s)	85, 268, 392, 554, 557
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	3 cut(s)	320, 368, 382
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	4 cut(s)	35, 143, 167, 362
MluNI	TGGCCA	1 cut(s)	485
MnlI	CCTC	7 cut(s)	150, 165, 174, 229, 274, 414, 499
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	48, 437
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	358, 399
NdeII	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
NlaIII	CATG	6 cut(s)	47, 247, 356, 459, 484, 524
NlaIV	GGNNCC	2 cut(s)	315, 316
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	315, 316
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	3 cut(s)	313, 314, 508
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	3 cut(s)	320, 368, 382
PvuI	CGATCG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	48, 437
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	9 cut(s)	114, 177, 234, 274, 320, 345, 368, 382, 423
Sau96I	GGNCC	3 cut(s)	313, 314, 508
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	5 cut(s)	221, 266, 464, 504, 513
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	48, 437
Sse9I	AATT	4 cut(s)	35, 143, 167, 362
SspMI	CTAG	2 cut(s)	24, 372
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	511
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	176, 339
TasI	AATT	4 cut(s)	35, 143, 167, 362
TatI	WGTACW	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	462
TspDTI	ATGAA	3 cut(s)	75, 232, 286
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	24, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.