Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

49080672 .. 49081025

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG388500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGTCTCAAGCGCCTCCACCGGCTCCGGCCAATACTTCGTTGACCTCCGCCTCGGCACTCCTCCTCATCGCCGACACCAACAATGATTTGGTCTGGCTCCGCTTCTCCACCTCCCATGGCGATGATGTTTTCCCCCAAAGACTTCGTCCTCTCTCTCCAGCGCCCCAGATCCGTCATCATTCTCGTCAAGACCAGACCATCGCCGCCCTATCAGCCTACATGGAGCCCGGCGACACCATCATCGACGGCGGCAACGAGTGGTACCAGAACACCGAGCGCCGCATCCACGACGCCTCCGCCAAAGGCCTCCTCTACCTCGGCATGGGAGTCTCCGACGGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

117

Amino Acids

12.6

Weight (kDa)

5.35

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	63 - 117	1.6e-09	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AciI	CCGC	6 cut(s)	51, 103, 207, 252, 283, 300
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	12, 337
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	30, 307
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp718I	GGTACC	1 cut(s)	264
AspLEI	GCGC	3 cut(s)	16, 166, 282
AsuC2I	CCSGG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	231
BccI	CCATC	2 cut(s)	209, 248
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	12, 337
BfoI	RGCGCY	3 cut(s)	17, 167, 283
BisI	GCNGC	3 cut(s)	207, 253, 283
BlsI	GCNGC	3 cut(s)	208, 254, 284
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	4 cut(s)	27, 101, 228, 266
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	54, 118, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	54, 118, 319
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseRI	GAGGAG	3 cut(s)	53, 56, 302
BshFI	GGCC	2 cut(s)	32, 309
BshNI	GGYRCC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	23, 29, 231
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	12, 337
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	32, 309
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	6 cut(s)	51, 103, 207, 252, 283, 300
BspANI	GGCC	2 cut(s)	32, 309
BspLI	GGNNCC	4 cut(s)	27, 101, 228, 266
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	54, 118, 319
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	3 cut(s)	17, 167, 283
BstHHI	GCGC	3 cut(s)	16, 166, 282
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	2 cut(s)	12, 337
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	32, 309
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	3 cut(s)	55, 138, 187
BtsCI	GGATG	1 cut(s)	285
CfoI	GCGC	3 cut(s)	16, 166, 282
Cfr10I	RCCGGY	1 cut(s)	22
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	119, 223, 325
CviJI	RGCY	6 cut(s)	26, 32, 100, 218, 229, 309
CviKI_1	RGCY	6 cut(s)	26, 32, 100, 218, 229, 309
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	40, 289
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	122, 226, 328
FaiI	YATR	3 cut(s)	120, 224, 326
FatI	CATG	3 cut(s)	118, 222, 324
Fnu4HI	GCNGC	3 cut(s)	207, 253, 283
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	207, 253, 283
GlaI	GCGC	3 cut(s)	15, 165, 281
GluI	GCNGC	3 cut(s)	207, 253, 283
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	3 cut(s)	17, 167, 283
HaeIII	GGCC	2 cut(s)	32, 309
HapII	CCGG	3 cut(s)	23, 29, 231
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	3 cut(s)	16, 166, 282
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	122, 226, 328
Hin6I	GCGC	3 cut(s)	14, 164, 280
HinP1I	GCGC	3 cut(s)	14, 164, 280
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	3 cut(s)	23, 29, 231
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	3 cut(s)	251, 296, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	122, 226, 328
HspAI	GCGC	3 cut(s)	14, 164, 280
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	31, 105, 226
LpnPI	CCDG	9 cut(s)	36, 42, 82, 174, 182, 209, 244, 281, 333
LweI	GCATC	1 cut(s)	294
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	3 cut(s)	23, 29, 231
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	122, 226, 328
NlaIV	GGNNCC	4 cut(s)	27, 101, 228, 266
NmeAIII	GCCGAG	2 cut(s)	35, 300
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	208, 254, 284
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	27, 101, 228, 266
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	3 cut(s)	207, 253, 283
Sau3AI	GATC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	3 cut(s)	50, 116, 321
SfaNI	GCATC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	6 cut(s)	51, 103, 207, 252, 283, 300
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	118
TaqI	TCGA	1 cut(s)	246
TauI	GCSGC	3 cut(s)	209, 255, 285
TspGWI	ACGGA	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.