Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

421736 .. 422272

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTGCACCACCAAAACCCACAAGAATAGGCCTTGCTGGTTTGGCTGTCATGGGCCAAAATTTGGCCCTCAACATTGCAGAGAAAGGCTTCCCCATTTCGGTATACAATAGAACTACCTCCAAAGTTGATGAGACTGTTGAGCGAGCTAAGAAGGAAGGAAACCTTCCCCTTTATGGATTCCATGATCCGCAATCTTTTGTTAAGTCAATCCAGAAACCCCGTGTCGTGATCATGCTTGTCAAGGCTGGGGCGCCTGTTGACCAGACCATAAAGACCCTCTCCGTCCACCTGGAGAAAGGTGACTGCATCATTGATGGTGGTAATGAGTGGTATGAGAACACTGAGAGGAGGGAGAAGGCCATGGCTGAATTAGGTCTTCTTTACCTTGGAATGGGAGTTTCAGGTGGTGAGGAGGGGGCTCGATACGGGCCTTCTATGATGCCTGGAGGATCCTTTGAGGCCTATAAGTACATTGAAGACATTCTTCTTAAGGCGACAGCTCAAGTTCCGGCCAGTGGTCCCTGTGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0004616 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008037 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0019822 GO:0019953 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045026 GO:0050896 GO:0051704 GO:0055114 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0080173 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

179

Amino Acids

19.17

Weight (kDa)

6.74

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	9 - 170	1e-45	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	3 cut(s)	182, 447, 460
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	5 cut(s)	64, 100, 176, 394, 518
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	291, 445
AluBI	AGCT	2 cut(s)	149, 503
AluI	AGCT	2 cut(s)	149, 503
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	182, 447, 460
AoxI	GGCC	7 cut(s)	31, 55, 66, 360, 431, 462, 513
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	61
Asp700I	GAANNNNTTC	2 cut(s)	89, 483
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	55, 67, 431, 521
AsuHPI	GGTGA	2 cut(s)	314, 422
AvaII	GGWCC	1 cut(s)	521
BamHI	GGATCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	371, 486
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	293, 447
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	257
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	293, 447
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	4 cut(s)	55, 67, 431, 521
BmiI	GGNNCC	3 cut(s)	255, 454, 523
BmrFI	CCNGG	2 cut(s)	293, 447
BmsI	GCATC	2 cut(s)	318, 432
BpiI	GAAGAC	2 cut(s)	371, 486
BpmI	CTGGAG	2 cut(s)	314, 468
BpuEI	CTTGAG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	363, 388
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 100, 176, 394, 518
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	293, 447
BseDI	CCNNGG	2 cut(s)	363, 388
BseLI	CCNNNNNNNGG	5 cut(s)	64, 100, 176, 394, 518
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	364, 428
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	7 cut(s)	33, 57, 68, 362, 433, 464, 515
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	5 cut(s)	64, 100, 176, 394, 518
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	7 cut(s)	33, 57, 68, 362, 433, 464, 515
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	187, 231, 452
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	7 cut(s)	33, 57, 68, 362, 433, 464, 515
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	255, 454, 523
BspPI	GGATC	3 cut(s)	182, 447, 460
BspT107I	GGYRCC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	363, 388
BssMI	GATC	3 cut(s)	187, 231, 452
BssNAI	GTATAC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	363, 388
Bst1107I	GTATAC	1 cut(s)	106
Bst2UI	CCWGG	2 cut(s)	293, 447
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	150, 345
BstDSI	CCRYGG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	190, 234, 455
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	187, 231, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	2 cut(s)	293, 447
BstSCI	CCNGG	2 cut(s)	291, 445
BstV2I	GAAGAC	2 cut(s)	371, 486
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BstZ17I	GTATAC	1 cut(s)	106
BsuRI	GGCC	7 cut(s)	33, 57, 68, 362, 433, 464, 515
BtgI	CCRYGG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	342, 523
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	4 cut(s)	55, 67, 431, 521
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	52, 185, 235, 364
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	150, 345
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	3 cut(s)	189, 233, 454
DpnII	GATC	3 cut(s)	187, 231, 452
EaeI	YGGCCR	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	363, 388
Eco147I	AGGCCT	2 cut(s)	33, 464
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	291, 445
EcoT14I	CCWWGG	2 cut(s)	363, 388
EcoT38I	GRGCYC	1 cut(s)	424
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	363, 388
FaeI	CATG	4 cut(s)	55, 188, 238, 367
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 471, 503
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	4 cut(s)	51, 184, 234, 363
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	314, 468
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	7 cut(s)	33, 57, 68, 362, 433, 464, 515
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	55, 188, 238, 367
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	314, 422
Hpy166II	GTNNAC	3 cut(s)	106, 262, 289
Hpy188III	TCNNGA	2 cut(s)	214, 229
Hpy8I	GTNNAC	3 cut(s)	106, 262, 289
HpyAV	CCTTC	5 cut(s)	148, 152, 176, 352, 444
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	8, 80, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	150, 345
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	55, 188, 238, 367
HspAI	GCGC	1 cut(s)	254
KasI	GGCGCC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	187, 231, 452
LweI	GCATC	2 cut(s)	318, 432
MaeIII	GTNAC	2 cut(s)	302, 529
MalI	GATC	3 cut(s)	189, 233, 454
MboI	GATC	3 cut(s)	187, 231, 452
MboII	GAAGA	3 cut(s)	371, 479, 491
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	61, 371
Mly113I	GGCGCC	1 cut(s)	254
MnlI	CCTC	9 cut(s)	80, 130, 290, 342, 345, 406, 409, 443, 454
MroXI	GAANNNNTTC	2 cut(s)	89, 483
MseI	TTAA	3 cut(s)	204, 492, 535
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	293, 447
MvaI	CCWGG	2 cut(s)	293, 447
MwoI	GCNNNNNNNGC	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	187, 231, 452
NlaIII	CATG	4 cut(s)	55, 188, 238, 367
NlaIV	GGNNCC	3 cut(s)	255, 454, 523
NmuCI	GTSAC	2 cut(s)	302, 529
PceI	AGGCCT	2 cut(s)	33, 464
PdmI	GAANNNNTTC	2 cut(s)	89, 483
PfeI	GAWTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	291, 445
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	2 cut(s)	291, 445
PspN4I	GGNNCC	3 cut(s)	255, 454, 523
PspPI	GGNCC	4 cut(s)	55, 67, 431, 521
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	3 cut(s)	204, 492, 535
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	187, 231, 452
Sau96I	GGNCC	4 cut(s)	55, 67, 431, 521
ScrFI	CCNGG	2 cut(s)	293, 447
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	9 cut(s)	122, 151, 168, 294, 304, 379, 390, 409, 505
SfaNI	GCATC	2 cut(s)	318, 432
SfoI	GGCGCC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	491, 504
SmoI	CTYRAG	2 cut(s)	491, 504
Sse9I	AATT	2 cut(s)	61, 371
SseBI	AGGCCT	2 cut(s)	33, 464
SsiI	CCGC	1 cut(s)	191
SspDI	GGCGCC	1 cut(s)	253
StuI	AGGCCT	2 cut(s)	33, 464
StyD4I	CCNGG	2 cut(s)	291, 445
StyI	CCWWGG	2 cut(s)	363, 388
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	424
TasI	AATT	2 cut(s)	61, 371
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	204, 492, 535
Tru9I	TTAA	3 cut(s)	204, 492, 535
TscAI	CASTG	2 cut(s)	349, 523
TseFI	GTSAC	2 cut(s)	302, 529
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	302, 529
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	349, 523
Van91I	CCANNNNNTGG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	2 cut(s)	89, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.