Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

75555998 .. 75556402

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG575600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCACTCTCCTCCTCAATCGCCGCCACCTCCCATGTCGTCTCTAGCGCCTCCACCAGCTCCGGCCAGTACTTCGTCGACCTCCGCCTCGGCACTCCTCCTCGTCGCCGACACCTGCAACGATTTGGTCTGGCTCCTCTTCTCCACCTCCCACGGCGATGCTTTTTGCCCCCAAAGACTTCGTCCTCTCTCTCTCTCCAGCGCCCCAGATCCGTCATCATTCTCGTCAAGGCCGGCGCCCCTGTCGACCAGATCATCGCCGCTCTGTCCGCCTACATGGGGCCCGACGACATCATTGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGAGGCCTCCACCAAGGGCCTCATCTACCTCGGCATGGGAGTCTCCGGCGGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

134

Amino Acids

14.37

Weight (kDa)

9.88

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	68 - 134	2.9e-12	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	2 cut(s)	78, 246
AciI	CCGC	7 cut(s)	24, 85, 261, 270, 303, 334, 390
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	71, 317
AfiI	CCNNNNNNNGG	2 cut(s)	279, 376
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	46, 388
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	5 cut(s)	64, 231, 281, 345, 358
ApaI	GGGCCC	1 cut(s)	285
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspLEI	GCGC	4 cut(s)	50, 204, 239, 333
AspS9I	GGNCC	3 cut(s)	281, 282, 358
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	341
BceAI	ACGGC	2 cut(s)	170, 316
BcoDI	GTCTC	2 cut(s)	46, 388
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	4 cut(s)	51, 205, 240, 334
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	24, 261, 304, 334
BlsI	GCNGC	4 cut(s)	25, 262, 305, 335
BmcAI	AGTACT	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	281, 282, 358
BmiI	GGNNCC	4 cut(s)	135, 238, 282, 283
BmsI	GCATC	2 cut(s)	149, 345
BpmI	CTGGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	88, 152, 354, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 376
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	88, 152, 354, 370
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	279, 376
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	4 cut(s)	4, 87, 90, 126
BseSI	GKGCMC	1 cut(s)	285
BshFI	GGCC	5 cut(s)	66, 233, 283, 347, 360
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	63, 234, 387
BslI	CCNNNNNNNGG	2 cut(s)	279, 376
BsmAI	GTCTC	2 cut(s)	46, 388
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	5 cut(s)	66, 233, 283, 347, 360
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	209, 252
BspACI	CCGC	7 cut(s)	24, 85, 261, 270, 303, 334, 390
BspANI	GGCC	5 cut(s)	66, 233, 283, 347, 360
BspLI	GGNNCC	4 cut(s)	135, 238, 282, 283
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	4 cut(s)	88, 152, 354, 370
BssMI	GATC	2 cut(s)	209, 252
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	336
BstH2I	RGCGCY	4 cut(s)	51, 205, 240, 334
BstHHI	GCGC	4 cut(s)	50, 204, 239, 333
BstKTI	GATC	2 cut(s)	212, 255
BstMAI	GTCTC	2 cut(s)	46, 388
BstMBI	GATC	2 cut(s)	209, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	5 cut(s)	66, 233, 283, 347, 360
BtgI	CCRYGG	1 cut(s)	152
BtgZI	GCGATG	2 cut(s)	172, 241
BtsCI	GGATG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	4 cut(s)	50, 204, 239, 333
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	281, 282, 358
Csp6I	GTAC	2 cut(s)	70, 316
CviAII	CATG	3 cut(s)	35, 277, 376
CviJI	RGCY	7 cut(s)	60, 66, 134, 233, 283, 347, 360
CviKI_1	RGCY	7 cut(s)	60, 66, 134, 233, 283, 347, 360
CviQI	GTAC	2 cut(s)	70, 316
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	2 cut(s)	211, 254
DpnII	GATC	2 cut(s)	209, 252
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	2 cut(s)	74, 259
Eco130I	CCWWGG	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	281, 358
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	38, 280, 379
FaiI	YATR	3 cut(s)	36, 278, 377
FatI	CATG	3 cut(s)	34, 276, 375
FauI	CCCGC	1 cut(s)	383
FblI	GTMKAC	2 cut(s)	78, 246
Fnu4HI	GCNGC	4 cut(s)	24, 261, 304, 334
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	24, 261, 304, 334
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	4 cut(s)	49, 203, 238, 332
GluI	GCNGC	4 cut(s)	24, 261, 304, 334
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	4 cut(s)	51, 205, 240, 334
HaeIII	GGCC	5 cut(s)	66, 233, 283, 347, 360
HapII	CCGG	3 cut(s)	63, 234, 387
HhaI	GCGC	4 cut(s)	50, 204, 239, 333
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	38, 280, 379
Hin6I	GCGC	4 cut(s)	48, 202, 237, 331
HinP1I	GCGC	4 cut(s)	48, 202, 237, 331
HincII	GTYRAC	2 cut(s)	79, 247
HindII	GTYRAC	2 cut(s)	79, 247
HinfI	GANTC	1 cut(s)	381
HpaII	CCGG	3 cut(s)	63, 234, 387
Hpy166II	GTNNAC	2 cut(s)	79, 247
Hpy8I	GTNNAC	2 cut(s)	79, 247
Hpy99I	CGWCG	3 cut(s)	80, 108, 290
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	38, 280, 379
HspAI	GCGC	4 cut(s)	48, 202, 237, 331
KasI	GGCGCC	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	209, 252
LmnI	GCTCC	2 cut(s)	65, 139
LweI	GCATC	2 cut(s)	149, 345
MaeI	CTAG	1 cut(s)	45
MalI	GATC	2 cut(s)	211, 254
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	2 cut(s)	209, 252
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	285
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	3 cut(s)	63, 234, 387
MwoI	GCNNNNNNNGC	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	2 cut(s)	209, 252
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	38, 280, 379
NlaIV	GGNNCC	4 cut(s)	135, 238, 282, 283
NmeAIII	GCCGAG	2 cut(s)	69, 351
PaqCI	CACCTGC	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	3 cut(s)	306, 315, 324
PdiI	GCCGGC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	25, 262, 305, 335
PleI	GAGTC	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	135, 238, 282, 283
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	281, 282, 358
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	71, 317
RsaNI	GTAC	2 cut(s)	70, 316
RseI	CAYNNNNRTG	1 cut(s)	157
SalI	GTCGAC	2 cut(s)	77, 245
SatI	GCNGC	4 cut(s)	24, 261, 304, 334
Sau3AI	GATC	2 cut(s)	209, 252
Sau96I	GGNCC	3 cut(s)	281, 282, 358
ScaI	AGTACT	1 cut(s)	71
SchI	GAGTC	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	6 cut(s)	32, 62, 84, 117, 150, 372
SfaNI	GCATC	2 cut(s)	149, 345
SfoI	GGCGCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	157
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	7 cut(s)	24, 85, 261, 270, 303, 334, 390
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	354
TaqI	TCGA	2 cut(s)	78, 246
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	4 cut(s)	26, 263, 306, 336
TspGWI	ACGGA	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	181
XmiI	GTMKAC	2 cut(s)	78, 246
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.