FvH4_1g20750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005517
Physical Location & Seq
Reverse (-)
12907034 .. 12908750
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20750.t2

Sequence Viewer

Length: 438 bp
ATGGTAATTCATAAAGGGGAATCCCAAACGTCATGTACAAAGTTACGAAAACGAAAACGAAATGCTCCTCGCTGCACCTGTCCCGGACACCCTTCCAAAATGGCGGCCAAAATTGAGAAGCGTCCTTTACCAAAGGGATATGGTTATGTTCCTTGGCTATCGTTGGGTAGGATACGTCCCTACCATTTAAGTTTTACCAATCAAATTGGTTACATGACTTGTGAGCGTTGTGGTATCAATGGTGACCACTGGGAACCATTTTGCACAAAACCAATCAATGATCCTCCAGAAACAGAAGAAGAAGCTGCCAATCCGCTGTCGTGGAAGTATATATTGGGGAATTTCAATTTAAAAGAATATCTTGAAAAACAGAAACGTAAGCCTCAAGGGAAACCAGAAAGAACTTTTGAGAGGGTGGTGAGAACAAATGGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

9.77

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 314
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 2 cut(s) 105, 430
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 2 cut(s) 346, 365
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 105, 430
ApeKI GCWGC 2 cut(s) 72, 305
ApoI RAATTY 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 254, 430
BbvI GCAGC 2 cut(s) 59, 292
BceAI ACGGC 1 cut(s) 417
BciVI GTATCC 1 cut(s) 165
BcnI CCSGG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 3 cut(s) 73, 105, 306
BlsI GCNGC 3 cut(s) 74, 106, 307
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 59, 292
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 2 cut(s) 107, 432
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 2 cut(s) 66, 162
BsmFI GGGAC 2 cut(s) 66, 162
BsnI GGCC 2 cut(s) 107, 432
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 2 cut(s) 104, 314
BspANI GGCC 2 cut(s) 107, 432
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 35
BstEII GGTNACC 1 cut(s) 242
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 59, 292
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 107, 432
BtsIMutI CAGTG 1 cut(s) 247
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 33, 214
CviJI RGCY 5 cut(s) 107, 157, 305, 382, 432
CviKI_1 RGCY 5 cut(s) 107, 157, 305, 382, 432
CviQI GTAC 1 cut(s) 36
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 351
EaeI YGGCCR 2 cut(s) 105, 430
Eco130I CCWWGG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 2 cut(s) 36, 217
FaiI YATR 7 cut(s) 12, 34, 141, 147, 215, 330, 332
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 66, 162
FatI CATG 2 cut(s) 32, 213
Fnu4HI GCNGC 3 cut(s) 73, 105, 306
Fsp4HI GCNGC 3 cut(s) 73, 105, 306
GluI GCNGC 3 cut(s) 73, 105, 306
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 107, 432
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 36, 217
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 254, 430
Hpy188III TCNNGA 2 cut(s) 287, 362
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 3 cut(s) 29, 175, 376
HpyCH4V TGCA 2 cut(s) 75, 264
HpySE526I ACGT 3 cut(s) 29, 175, 376
Hsp92II CATG 2 cut(s) 36, 217
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 91, 97, 235, 300, 408
Lsp1109I GCAGC 2 cut(s) 59, 292
MaeII ACGT 3 cut(s) 29, 175, 376
MaeIII GTNAC 3 cut(s) 42, 209, 242
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 308, 311
MluCI AATT 5 cut(s) 6, 111, 204, 340, 346
MnlI CCTC 4 cut(s) 78, 294, 393, 405
MseI TTAA 2 cut(s) 188, 350
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 84
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 36, 217
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 3 cut(s) 74, 106, 307
PspEI GGTNACC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 255
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 188, 350
SatI GCNGC 3 cut(s) 73, 105, 306
Sau3AI GATC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 32, 80, 178, 307, 379
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
Sse9I AATT 5 cut(s) 6, 111, 204, 340, 346
SsiI CCGC 2 cut(s) 104, 314
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 152
TaiI ACGT 3 cut(s) 32, 178, 379
TasI AATT 5 cut(s) 6, 111, 204, 340, 346
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 188, 350
Tru9I TTAA 2 cut(s) 188, 350
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 2 cut(s) 72, 305
Tsp45I GTSAC 1 cut(s) 242
TspRI CASTG 1 cut(s) 254
XapI RAATTY 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.