Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

65984951 .. 65985593

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCAGAAATCGAAGCCACCATCGCCCGCGGCAAACAGACGGAGATTGATAAAGGGGAATCGCAAACACCATGTACAAAGTCACGAAAACAAAAACGAAATGCTCATTGTTGTTGCACGTGTCATGATCCCAAAACCCGACACTGTGCCAAAACTGGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTTTGCCAGTATTTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTACATGTCTTGTTTCCGTTGTGGTATGAATGGTGACCACTGGGATCCATTTTGCCCCAACTCGATCAATGATCAACCAGACTCAGGAGAAGCTGCTCCTGCCCTTGACATGTCATGGAGTTATATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGAATAAGACTGATGGGAAACCAGAACCACCACGGAGGAAGGCGGTGAAATCAAAAGCTCAAGCGTGTCCAATCCATTGCTCAAACAAAACCCGTGCCAGAACCAAGAAGCCTTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

9.19

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AciI	CCGC	3 cut(s)	28, 30, 461
AclWI	GGATC	3 cut(s)	122, 293, 306
AcsI	RAATTY	2 cut(s)	236, 388
AcvI	CACGTG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	156, 338
AflIII	ACRYGT	3 cut(s)	119, 258, 363
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	2 cut(s)	347, 476
AluI	AGCT	2 cut(s)	347, 476
AlwI	GGATC	3 cut(s)	122, 293, 306
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	236, 388
AsuHPI	GGTGA	2 cut(s)	299, 475
BamHI	GGATCC	1 cut(s)	298
BbrPI	CACGTG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	29, 425
BclI	TGATCA	1 cut(s)	325
BisI	GCNGC	2 cut(s)	31, 348
BlsI	GCNGC	2 cut(s)	32, 349
BmiI	GGNNCC	1 cut(s)	300
BmrI	ACTGGG	2 cut(s)	165, 304
BmuI	ACTGGG	2 cut(s)	165, 304
BpuEI	CTTGAG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	28, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 338
Bse1I	ACTGG	3 cut(s)	160, 200, 299
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	28, 449
BseLI	CCNNNNNNNGG	2 cut(s)	156, 338
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	160, 200, 299
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	156, 338
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	127, 244, 298, 318, 325
BspACI	CCGC	3 cut(s)	28, 30, 461
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	122, 293, 306
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	160, 200, 299
BssECI	CCNNGG	2 cut(s)	28, 449
BssMI	GATC	5 cut(s)	127, 244, 298, 318, 325
Bst4CI	ACNGT	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	2 cut(s)	28, 449
BstEII	GGTNACC	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	5 cut(s)	130, 247, 301, 321, 328
BstMBI	GATC	5 cut(s)	127, 244, 298, 318, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 353
BstNSI	RCATGY	2 cut(s)	262, 367
BstPI	GGTNACC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BtgI	CCRYGG	2 cut(s)	28, 449
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	142, 292
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	124
Cfr42I	CCGCGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	5 cut(s)	72, 125, 259, 364, 369
CviJI	RGCY	4 cut(s)	17, 347, 476, 529
CviKI_1	RGCY	4 cut(s)	17, 347, 476, 529
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	5 cut(s)	129, 246, 300, 320, 327
DpnII	GATC	5 cut(s)	127, 244, 298, 318, 325
Eco72I	CACGTG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
FaeI	CATG	5 cut(s)	75, 128, 262, 367, 372
FaiI	YATR	9 cut(s)	73, 126, 189, 260, 281, 365, 370, 378, 380
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	5 cut(s)	71, 124, 258, 363, 368
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	31, 348
Fsp4HI	GCNGC	2 cut(s)	31, 348
GluI	GCNGC	2 cut(s)	31, 348
Hin1II	CATG	5 cut(s)	75, 128, 262, 367, 372
HinfI	GANTC	2 cut(s)	59, 335
HphI	GGTGA	2 cut(s)	299, 475
Hpy188I	TCNGA	2 cut(s)	244, 399
Hpy188III	TCNNGA	5 cut(s)	84, 125, 233, 339, 410
HpyAV	CCTTC	2 cut(s)	451, 540
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 353
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	75, 128, 262, 367, 372
Ksp22I	TGATCA	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	127, 244, 298, 318, 325
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	81, 221, 287
MalI	GATC	5 cut(s)	129, 246, 300, 320, 327
MboI	GATC	5 cut(s)	127, 244, 298, 318, 325
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	3 cut(s)	236, 388, 535
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	169, 174, 378, 447
MseI	TTAA	1 cut(s)	538
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	23, 353
NdeII	GATC	5 cut(s)	127, 244, 298, 318, 325
NlaIII	CATG	5 cut(s)	75, 128, 262, 367, 372
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	81, 287
NspI	RCATGY	2 cut(s)	262, 367
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	2 cut(s)	258, 363
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	32, 349
PleI	GAGTC	1 cut(s)	329
PmaCI	CACGTG	1 cut(s)	120
PmlI	CACGTG	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	120
PscI	ACATGT	2 cut(s)	258, 363
PspCI	CACGTG	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SacII	CCGCGG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	2 cut(s)	31, 348
Sau3AI	GATC	5 cut(s)	127, 244, 298, 318, 325
SchI	GAGTC	1 cut(s)	329
SetI	ASST	4 cut(s)	122, 166, 349, 478
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	3 cut(s)	236, 388, 535
SsiI	CCGC	3 cut(s)	28, 30, 461
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	12, 317
TasI	AATT	3 cut(s)	236, 388, 535
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	2 cut(s)	149, 299
TseFI	GTSAC	2 cut(s)	81, 287
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	81, 287
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	3 cut(s)	56, 260, 466
TspRI	CASTG	2 cut(s)	149, 299
XapI	RAATTY	2 cut(s)	236, 388
XceI	RCATGY	2 cut(s)	262, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.