Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Forward (+)

65088224 .. 65089030

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGAAATCGAAGCCACCATCGCCCGCCGCAAACAGATCGACGGCGGCAAACAGATGGAGATTCATAAAGGGGAATCGCAAACACCATGTAGTACAAAGTCACGAAAACGAAAACGAAAACGAAATGCTCATTGTTGTTGCACTTGTCATGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTATGCCAGTACGTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTTCATGTCTTGTTTACGTTGTGGTATGAGGGGTGACCACTGGGATCCCTTTTGCCCCAACTCGATCAATGATCCGCCAGACTCAGCAGAAGCTGCTCGAGTCACGGGCAGGTCATGGAATTACATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGAATAAGACTGATGGGAAACCAGAGAACCGCCACGGAGGAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.9

Weight (kDa)

9.89

Isoelectric Point (pI)

68.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	381
AciI	CCGC	6 cut(s)	28, 31, 48, 356, 475, 490
AclWI	GGATC	4 cut(s)	149, 320, 333, 347
AcsI	RAATTY	2 cut(s)	263, 415
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	2 cut(s)	97, 231
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
AlwI	GGATC	4 cut(s)	149, 320, 333, 347
AlwNI	CAGNNNCTG	1 cut(s)	374
Ama87I	CYCGRG	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	263, 415
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	3 cut(s)	29, 52, 452
BceAI	ACGGC	2 cut(s)	61, 156
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	3 cut(s)	31, 49, 375
BlsI	GCNGC	3 cut(s)	32, 50, 376
BmeT110I	CYCGRG	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	227, 326
BseDI	CCNNGG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	227, 326
BseXI	GCAGC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	378
Bsp143I	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
BspACI	CCGC	6 cut(s)	28, 31, 48, 356, 475, 490
BspCNI	CTCAG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	4 cut(s)	149, 320, 333, 347
BsrI	ACTGG	2 cut(s)	227, 326
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
BssNI	GRCGYC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	314
BstKTI	GATC	6 cut(s)	42, 157, 274, 328, 348, 355
BstMBI	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 374
BstPI	GGTNACC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	478
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	151
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	96, 230
CviAII	CATG	4 cut(s)	90, 152, 286, 396
CviJI	RGCY	2 cut(s)	17, 374
CviKI_1	RGCY	2 cut(s)	17, 374
CviQI	GTAC	2 cut(s)	96, 230
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	6 cut(s)	41, 156, 273, 327, 347, 354
DpnII	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
EciI	GGCGGA	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
FaeI	CATG	4 cut(s)	93, 155, 289, 399
FaiI	YATR	9 cut(s)	69, 91, 153, 216, 224, 287, 308, 397, 407
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	89, 151, 285, 395
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	31, 49, 375
Fsp4HI	GCNGC	3 cut(s)	31, 49, 375
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	3 cut(s)	31, 49, 375
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	93, 155, 289, 399
HinfI	GANTC	4 cut(s)	64, 77, 362, 381
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	271, 426
Hpy188III	TCNNGA	4 cut(s)	105, 152, 260, 437
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	47, 171
HpyAV	CCTTC	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	232, 298
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 374
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	2 cut(s)	232, 298
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	93, 155, 289, 399
Kzo9I	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
LpnPI	CCDG	7 cut(s)	213, 240, 273, 307, 372, 376, 480
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	232, 298
MaeIII	GTNAC	4 cut(s)	102, 248, 314, 382
MalI	GATC	6 cut(s)	41, 156, 273, 327, 347, 354
MboI	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	3 cut(s)	263, 400, 415
MlyI	GAGTC	2 cut(s)	356, 390
MnlI	CCTC	5 cut(s)	196, 201, 303, 405, 476
MwoI	GCNNNNNNNGC	2 cut(s)	23, 374
NdeII	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
NlaIII	CATG	4 cut(s)	93, 155, 289, 399
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	3 cut(s)	102, 314, 382
PaeR7I	CTCGAG	1 cut(s)	378
PagI	TCATGA	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	64, 77
PkrI	GCNGC	3 cut(s)	32, 50, 376
PleI	GAGTC	2 cut(s)	356, 389
PpsI	GAGTC	2 cut(s)	356, 389
Ppu21I	YACGTR	1 cut(s)	233
PspEI	GGTNACC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	327
PspXI	VCTCGAGB	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	97, 231
RsaNI	GTAC	2 cut(s)	96, 230
SatI	GCNGC	3 cut(s)	31, 49, 375
Sau3AI	GATC	6 cut(s)	39, 154, 271, 325, 345, 352
SchI	GAGTC	2 cut(s)	356, 390
SetI	ASST	5 cut(s)	193, 235, 301, 376, 395
Sfr274I	CTCGAG	1 cut(s)	378
SlaI	CTCGAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	3 cut(s)	263, 400, 415
SsiI	CCGC	6 cut(s)	28, 31, 48, 356, 475, 490
SspMI	CTAG	1 cut(s)	183
TaiI	ACGT	2 cut(s)	235, 301
TaqI	TCGA	4 cut(s)	12, 42, 344, 379
TasI	AATT	3 cut(s)	263, 400, 415
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	2 cut(s)	33, 51
TfiI	GAWTC	2 cut(s)	64, 77
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	3 cut(s)	102, 314, 382
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	3 cut(s)	102, 314, 382
TspDTI	ATGAA	2 cut(s)	56, 274
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	263, 415
XhoI	CTCGAG	1 cut(s)	378
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.