Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

25553426 .. 25554361

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGAAATCGAAGCCACCATCGCCCGCGGCGAACAGACAGAGATTGATAAAGGGGAATCGCAAACACCGTGGACAAAGTCACGAAAACGAAAACAAAATGCTCATTGTTGTTGCAGGTGTCATGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTTCGGCAGTATGTGTGGATAAGAATGGTAACTACATTCCAAGATTTTCTGATCGTGTTGCTTACATGTCTTGTCACCGTTGTGGTATGAAGGGTGACCACTGGGATCCATTTTGCCCCAACTCGATCAATGATCCGCCAGACTCAGGAGAAGCTGCTCCTACCCGTAACCCGTCATGGAATTATATATTGAGGAATTTCAACCTGAAAGAATATCTTGACAAAAAGAATAAGACTGATGGGAAACCAGAACCACCACGGAGGAAGGCGGTGAAATCAAAAGTGTCCAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.5

Weight (kDa)

9.55

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 30, 329, 461
AclWI	GGATC	4 cut(s)	122, 293, 306, 320
AcsI	RAATTY	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	156, 338
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	394
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AlwI	GGATC	4 cut(s)	122, 293, 306, 320
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	388
AsuHPI	GGTGA	3 cut(s)	260, 299, 475
BamHI	GGATCC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	29, 425
BceAI	ACGGC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	108
BisI	GCNGC	2 cut(s)	31, 348
BlsI	GCNGC	2 cut(s)	32, 349
BmiI	GGNNCC	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	28, 71, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 338
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	3 cut(s)	28, 71, 449
BseLI	CCNNNNNNNGG	2 cut(s)	156, 338
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	156, 338
Bsp143I	GATC	5 cut(s)	127, 244, 298, 318, 325
BspACI	CCGC	4 cut(s)	28, 30, 329, 461
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	4 cut(s)	122, 293, 306, 320
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	28, 71, 449
BssMI	GATC	5 cut(s)	127, 244, 298, 318, 325
BssNI	GRCGYC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	72, 272
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	3 cut(s)	28, 71, 449
BstEII	GGTNACC	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	5 cut(s)	130, 247, 301, 321, 328
BstMBI	GATC	5 cut(s)	127, 244, 298, 318, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BtgI	CCRYGG	3 cut(s)	28, 71, 449
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	124
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	53, 88
CviAII	CATG	3 cut(s)	125, 259, 369
CviJI	RGCY	2 cut(s)	17, 347
CviKI_1	RGCY	2 cut(s)	17, 347
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	5 cut(s)	129, 246, 300, 320, 327
DpnII	GATC	5 cut(s)	127, 244, 298, 318, 325
EciI	GGCGGA	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
FaeI	CATG	3 cut(s)	128, 262, 372
FaiI	YATR	9 cut(s)	126, 189, 205, 260, 281, 370, 378, 380, 487
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	3 cut(s)	124, 258, 368
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	31, 348
Fsp4HI	GCNGC	2 cut(s)	31, 348
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	31, 348
HgaI	GACGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	3 cut(s)	128, 262, 372
HinfI	GANTC	2 cut(s)	59, 335
HphI	GGTGA	3 cut(s)	260, 299, 475
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	84, 125, 339, 410
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	204, 277, 451
HpyCH4III	ACNGT	2 cut(s)	72, 272
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	128, 262, 372
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	127, 244, 298, 318, 325
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	7 cut(s)	103, 186, 280, 324, 345, 410, 453
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	5 cut(s)	81, 221, 266, 287, 359
MalI	GATC	5 cut(s)	129, 246, 300, 320, 327
MboI	GATC	5 cut(s)	127, 244, 298, 318, 325
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	373, 388
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	169, 174, 378, 447
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	5 cut(s)	127, 244, 298, 318, 325
NlaIII	CATG	3 cut(s)	128, 262, 372
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	3 cut(s)	81, 266, 287
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	273
PagI	TCATGA	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	108
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 68
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	32, 349
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	258
PspEI	GGTNACC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	2 cut(s)	31, 348
Sau3AI	GATC	5 cut(s)	127, 244, 298, 318, 325
SchI	GAGTC	1 cut(s)	329
SetI	ASST	4 cut(s)	122, 166, 349, 399
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	373, 388
SsiI	CCGC	4 cut(s)	28, 30, 329, 461
SspMI	CTAG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	72, 272
TaqI	TCGA	2 cut(s)	12, 317
TasI	AATT	2 cut(s)	373, 388
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	3 cut(s)	81, 266, 287
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	3 cut(s)	81, 266, 287
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.