Rroxscaffold_2G00129290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005517
Physical Location & Seq
Forward (+)
65103504 .. 65104145
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129290.1

Sequence Viewer

Length: 420 bp
ATGGCAGAAATCGAAGCCACCATCGCCCGCGGCAAACAGACGGAGATTGATAAAGAGGGATTTGGTTATGTTCCTTTGCCAGTATTTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTACATGTCTTGTTTCCGTTGTGGTATGAATGGTGACCACTGGGATCCATTTTGCCCCAACTCGATCAATGATCAACCAGACTCAGGAGAAGCTGCTCCTGCCCTTGACATGTCATGGAGTTATATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGAATAAGACTGATGGGAAACCAGAACCACCACGGAGGAAGGCGGTGAAATCAAAAGCTCAAGCGTGTCCAATCCATTGCTCAAACAAAACCCGTGCCAGAACCAAGAAGCCTTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.7

Weight (kDa)

8.79

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 3 cut(s) 28, 30, 341
AclWI GGATC 2 cut(s) 173, 186
AcsI RAATTY 2 cut(s) 116, 268
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 2 cut(s) 138, 243
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 2 cut(s) 227, 356
AluI AGCT 2 cut(s) 227, 356
AlwI GGATC 2 cut(s) 173, 186
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 116, 268
AsuHPI GGTGA 2 cut(s) 179, 355
BamHI GGATCC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 29, 305
BclI TGATCA 1 cut(s) 205
BisI GCNGC 2 cut(s) 31, 228
BlsI GCNGC 2 cut(s) 32, 229
BmiI GGNNCC 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 28, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 80, 179
Bse3DI GCAATG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 28, 329
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 80, 179
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp143I GATC 4 cut(s) 124, 178, 198, 205
BspACI CCGC 3 cut(s) 28, 30, 341
BspCNI CTCAG 1 cut(s) 230
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 173, 186
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 2 cut(s) 80, 179
BssECI CCNNGG 2 cut(s) 28, 329
BssMI GATC 4 cut(s) 124, 178, 198, 205
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 2 cut(s) 28, 329
BstEII GGTNACC 1 cut(s) 167
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 4 cut(s) 127, 181, 201, 208
BstMBI GATC 4 cut(s) 124, 178, 198, 205
BstMWI GCNNNNNNNGC 2 cut(s) 23, 233
BstNSI RCATGY 2 cut(s) 142, 247
BstPI GGTNACC 1 cut(s) 167
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtgI CCRYGG 2 cut(s) 28, 329
BtgZI GCGATG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 28
Cfr42I CCGCGG 1 cut(s) 31
CviAII CATG 3 cut(s) 139, 244, 249
CviJI RGCY 4 cut(s) 17, 227, 356, 409
CviKI_1 RGCY 4 cut(s) 17, 227, 356, 409
DdeI CTNAG 1 cut(s) 217
DpnI GATC 4 cut(s) 126, 180, 200, 207
DpnII GATC 4 cut(s) 124, 178, 198, 205
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
FaeI CATG 3 cut(s) 142, 247, 252
FaiI YATR 7 cut(s) 69, 140, 161, 245, 250, 258, 260
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 3 cut(s) 138, 243, 248
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 31, 228
Fsp4HI GCNGC 2 cut(s) 31, 228
GluI GCNGC 2 cut(s) 31, 228
Hin1II CATG 3 cut(s) 142, 247, 252
HinfI GANTC 1 cut(s) 215
HphI GGTGA 2 cut(s) 179, 355
Hpy188I TCNGA 2 cut(s) 124, 279
Hpy188III TCNNGA 3 cut(s) 113, 219, 290
HpyAV CCTTC 2 cut(s) 331, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 233
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 3 cut(s) 142, 247, 252
Ksp22I TGATCA 1 cut(s) 205
KspI CCGCGG 1 cut(s) 31
Kzo9I GATC 4 cut(s) 124, 178, 198, 205
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 93, 126, 160, 204, 225, 246, 333, 409
Lsp1109I GCAGC 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 101, 167
MalI GATC 4 cut(s) 126, 180, 200, 207
MboI GATC 4 cut(s) 124, 178, 198, 205
MflI RGATCY 1 cut(s) 178
MluCI AATT 3 cut(s) 116, 268, 415
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 3 cut(s) 49, 258, 327
MseI TTAA 1 cut(s) 418
MspA1I CMGCKG 1 cut(s) 30
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 23, 233
NdeII GATC 4 cut(s) 124, 178, 198, 205
NlaIII CATG 3 cut(s) 142, 247, 252
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 2 cut(s) 142, 247
PciI ACATGT 2 cut(s) 138, 243
PkrI GCNGC 2 cut(s) 32, 229
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 2 cut(s) 138, 243
PspEI GGTNACC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 178
SacII CCGCGG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 2 cut(s) 31, 228
Sau3AI GATC 4 cut(s) 124, 178, 198, 205
SchI GAGTC 1 cut(s) 209
SetI ASST 2 cut(s) 229, 358
Sfr303I CCGCGG 1 cut(s) 31
SgrBI CCGCGG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 116, 268, 415
SsiI CCGC 3 cut(s) 28, 30, 341
TaqI TCGA 2 cut(s) 12, 197
TasI AATT 3 cut(s) 116, 268, 415
TauI GCSGC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 176
TspGWI ACGGA 3 cut(s) 56, 140, 346
TspRI CASTG 1 cut(s) 179
XapI RAATTY 2 cut(s) 116, 268
XceI RCATGY 2 cut(s) 142, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.