Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

12941386 .. 12943929

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACGGACACCAAAACGGAACGATCGTTCTACAGCAGTTCCGATATGAGCGATCTGGATTCCAGCGAAGTGGATGTCAGCGACTCGGATCTCAGCGACCCGGATTTCATCCCCGACAAACAGATCGACGGCGAAAAACAGATCGACGGCGACAAGCAGATCGACGGCGGGAAACAGATGGTGACTGATAAAGAGGAATCCCAAACGTCTTCTAAAAAGTCACGTAAACGAAAACGGAATTCTTCTCGCTGCACCTGCTGCACCTGTCCCCGACACTCTGTCAAAATGGCCAAAACTGAGAAGCGTCCTCTACCAAAGGGGTATGGTTATGTTCCTTGGCTATCGCTGGGTAGGATAGGTCCCTACCATCCAAGTTTTACCAATCAAATTGGTTACATGACTTGTGCCCGTTGTGGTATCAATGGTGACCACTGGGAACCATTTTGCCTAAATCCAATCAATGATCCGCCAGAAGAAGAAGCTGCTGCTGATCCGGTGTCATGGAAGAATATACTGGGGAATTTCAATGCAAAAGAATATCTTGAAAAACAGAAACTTAAGTCTCAAGGGAAACAAAAACGACATGTTGAGAGGGTGGTGAAAACAAATGGCCGTTTACCTGGACGTGTTATTTCGCGCCGTCTGTGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.52

Weight (kDa)

8.83

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AccII	CGCG	1 cut(s)	637
AciI	CCGC	2 cut(s)	168, 467
AclWI	GGATC	3 cut(s)	96, 458, 485
AcoI	YGGCCR	2 cut(s)	288, 610
AcsI	RAATTY	2 cut(s)	238, 520
AflII	CTTAAG	1 cut(s)	557
AflIII	ACRYGT	2 cut(s)	583, 625
AgsI	TTSAA	2 cut(s)	526, 545
AhdI	GACNNNNNGTC	1 cut(s)	278
AjiI	CACGTC	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	619
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	1 cut(s)	482
AluI	AGCT	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	96, 458, 485
AoxI	GGCC	2 cut(s)	288, 610
ApeKI	GCWGC	4 cut(s)	249, 258, 482, 485
ApoI	RAATTY	2 cut(s)	238, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	193, 437, 610
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	236, 245, 469, 472
BccI	CCATC	2 cut(s)	172, 375
BceAI	ACGGC	5 cut(s)	145, 163, 181, 597, 624
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	250, 259, 483, 486
BlsI	GCNGC	4 cut(s)	251, 260, 484, 487
Bme1390I	CCNGG	2 cut(s)	101, 621
Bme18I	GGWCC	1 cut(s)	359
BmeRI	GACNNNNNGTC	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	361, 438
BmrFI	CCNGG	2 cut(s)	101, 621
BmrI	ACTGGG	2 cut(s)	442, 524
BmuI	ACTGGG	2 cut(s)	442, 524
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	437, 519
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	3 cut(s)	79, 108, 367
BseMII	CTCAG	2 cut(s)	106, 288
BseNI	ACTGG	2 cut(s)	437, 519
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	4 cut(s)	236, 245, 469, 472
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	2 cut(s)	235, 244
Bsh1236I	CGCG	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	290, 612
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	101, 494
BslFI	GGGAC	2 cut(s)	252, 345
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	252, 345
BsnI	GGCC	2 cut(s)	290, 612
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
BspACI	CCGC	2 cut(s)	168, 467
BspANI	GGCC	2 cut(s)	290, 612
BspCNI	CTCAG	2 cut(s)	105, 289
BspFNI	CGCG	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	361, 438
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	3 cut(s)	96, 458, 485
BspTI	CTTAAG	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	437, 519
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	92, 297
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	79, 108, 367
BstFNI	CGCG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	8 cut(s)	26, 55, 91, 126, 144, 162, 466, 493
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 258
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	99, 619
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	637
BstV1I	GCAGC	4 cut(s)	236, 245, 469, 472
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	290, 612
BtrI	CACGTC	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	79, 108, 367
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	293
CviAII	CATG	3 cut(s)	397, 501, 584
CviJI	RGCY	4 cut(s)	290, 340, 482, 612
CviKI_1	RGCY	4 cut(s)	290, 340, 482, 612
DdeI	CTNAG	2 cut(s)	92, 297
DpnI	GATC	8 cut(s)	25, 54, 90, 125, 143, 161, 465, 492
DpnII	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
DriI	GACNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	288, 610
Eam1105I	GACNNNNNGTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	400, 504, 587
FaiI	YATR	8 cut(s)	47, 324, 330, 398, 502, 512, 585, 652
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	2 cut(s)	252, 345
FatI	CATG	3 cut(s)	396, 500, 583
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	4 cut(s)	250, 259, 483, 486
FokI	GGATG	3 cut(s)	86, 95, 354
Fsp4HI	GCNGC	4 cut(s)	250, 259, 483, 486
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	4 cut(s)	250, 259, 483, 486
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	290, 612
HapII	CCGG	2 cut(s)	101, 494
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	400, 504, 587
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HinfI	GANTC	3 cut(s)	59, 83, 197
HpaII	CCGG	2 cut(s)	101, 494
HphI	GGTGA	3 cut(s)	193, 437, 610
Hpy166II	GTNNAC	2 cut(s)	227, 617
Hpy188I	TCNGA	2 cut(s)	43, 88
Hpy188III	TCNNGA	2 cut(s)	56, 542
Hpy8I	GTNNAC	2 cut(s)	227, 617
Hpy99I	CGWCG	3 cut(s)	131, 149, 167
HpyCH4IV	ACGT	3 cut(s)	206, 223, 625
HpyCH4V	TGCA	4 cut(s)	252, 261, 530, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 258
HpyF3I	CTNAG	2 cut(s)	92, 297
HpySE526I	ACGT	3 cut(s)	206, 223, 625
Hsp92II	CATG	3 cut(s)	400, 504, 587
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
Lsp1109I	GCAGC	4 cut(s)	236, 245, 469, 472
MaeII	ACGT	3 cut(s)	206, 223, 625
MaeIII	GTNAC	4 cut(s)	181, 219, 392, 425
MalI	GATC	8 cut(s)	25, 54, 90, 125, 143, 161, 465, 492
MboI	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
MboII	GAAGA	5 cut(s)	201, 234, 485, 488, 517
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	238, 387, 520
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	187, 318, 585
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	2 cut(s)	101, 494
MspR9I	CCNGG	2 cut(s)	101, 621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	637
MwoI	GCNNNNNNNGC	2 cut(s)	255, 258
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
NlaIII	CATG	3 cut(s)	400, 504, 587
NlaIV	GGNNCC	2 cut(s)	361, 438
NmuCI	GTSAC	3 cut(s)	181, 219, 425
NspI	RCATGY	1 cut(s)	587
PaqCI	CACCTGC	1 cut(s)	263
PciI	ACATGT	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	59, 197
PkrI	GCNGC	4 cut(s)	251, 260, 484, 487
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	361, 438
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	4 cut(s)	250, 259, 483, 486
Sau3AI	GATC	8 cut(s)	23, 52, 88, 123, 141, 159, 463, 490
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	101, 621
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	8 cut(s)	209, 226, 257, 266, 361, 484, 622, 628
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	557, 564
SmoI	CTYRAG	2 cut(s)	557, 564
Sse9I	AATT	3 cut(s)	238, 387, 520
SsiI	CCGC	2 cut(s)	168, 467
StyD4I	CCNGG	2 cut(s)	99, 619
StyI	CCWWGG	1 cut(s)	335
TaiI	ACGT	3 cut(s)	209, 226, 628
TaqI	TCGA	3 cut(s)	126, 144, 162
TasI	AATT	3 cut(s)	238, 387, 520
TfiI	GAWTC	2 cut(s)	59, 197
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	437
TseFI	GTSAC	3 cut(s)	181, 219, 425
TseI	GCWGC	4 cut(s)	249, 258, 482, 485
Tsp45I	GTSAC	3 cut(s)	181, 219, 425
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	3 cut(s)	20, 32, 250
TspRI	CASTG	1 cut(s)	437
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	238, 520
XceI	RCATGY	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.