Rw2G018860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005517
Physical Location & Seq
Forward (+)
24809770 .. 24810216
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018860.1

Sequence Viewer

Length: 342 bp
ATGGAGATTCATAAAGGGGAATCACCAACACCATGTAGTGCAAAGTCACGAAAACGAAAACGAAAAGCTCATTGTTGTTGCACTTGTCACGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATATTCCCATGCCAGTACGTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTACATGTCTTGTCGCCGTGGTGGTATGAGGGGTGACCACTGGGATCCCTTTTGCCCCAACTCGATCAATGATCCGCCAGACTCGGGAGAAGCTGCTCGAGTCGATCATGGAATTACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

9.44

Isoelectric Point (pI)

62.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AclWI GGATC 4 cut(s) 86, 257, 270, 284
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 120, 302
AflIII ACRYGT 2 cut(s) 169, 222
AluBI AGCT 2 cut(s) 68, 311
AluI AGCT 2 cut(s) 68, 311
AlwI GGATC 4 cut(s) 86, 257, 270, 284
Ama87I CYCGRG 2 cut(s) 301, 315
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 15, 263
AvaI CYCGRG 2 cut(s) 301, 315
BamHI GGATCC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 93, 219
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 301, 315
BmiI GGNNCC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 302
Bse1I ACTGG 2 cut(s) 164, 263
BseDI CCNNGG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 120, 302
BseNI ACTGG 2 cut(s) 164, 263
BseXI GCAGC 1 cut(s) 298
BsiHKCI CYCGRG 2 cut(s) 301, 315
BslI CCNNNNNNNGG 2 cut(s) 120, 302
BsoBI CYCGRG 2 cut(s) 301, 315
Bsp143I GATC 6 cut(s) 91, 208, 262, 282, 289, 322
BspACI CCGC 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 4 cut(s) 86, 257, 270, 284
BsrI ACTGG 2 cut(s) 164, 263
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 6 cut(s) 91, 208, 262, 282, 289, 322
BssNI GRCGYC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 235
BstEII GGTNACC 1 cut(s) 251
BstKTI GATC 6 cut(s) 94, 211, 265, 285, 292, 325
BstMBI GATC 6 cut(s) 91, 208, 262, 282, 289, 322
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 256
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 167
CviAII CATG 4 cut(s) 33, 160, 223, 326
CviJI RGCY 2 cut(s) 68, 311
CviKI_1 RGCY 2 cut(s) 68, 311
CviQI GTAC 1 cut(s) 167
DpnI GATC 6 cut(s) 93, 210, 264, 284, 291, 324
DpnII GATC 6 cut(s) 91, 208, 262, 282, 289, 322
EciI GGCGGA 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 301, 315
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
FaeI CATG 4 cut(s) 36, 163, 226, 329
FaiI YATR 8 cut(s) 12, 34, 153, 161, 224, 245, 327, 337
FatI CATG 4 cut(s) 32, 159, 222, 325
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 312
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 36, 163, 226, 329
HinfI GANTC 4 cut(s) 7, 20, 299, 318
HphI GGTGA 2 cut(s) 15, 263
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 4 cut(s) 48, 89, 197, 303
Hpy99I CGWCG 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 41, 81
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 36, 163, 226, 329
Kzo9I GATC 6 cut(s) 91, 208, 262, 282, 289, 322
LpnPI CCDG 5 cut(s) 150, 177, 210, 244, 309
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 4 cut(s) 45, 86, 185, 251
MalI GATC 6 cut(s) 93, 210, 264, 284, 291, 324
MboI GATC 6 cut(s) 91, 208, 262, 282, 289, 322
MflI RGATCY 1 cut(s) 262
MluCI AATT 2 cut(s) 200, 330
MlyI GAGTC 2 cut(s) 293, 327
MnlI CCTC 3 cut(s) 133, 138, 240
NdeII GATC 6 cut(s) 91, 208, 262, 282, 289, 322
NlaIII CATG 4 cut(s) 36, 163, 226, 329
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 3 cut(s) 45, 86, 251
NspI RCATGY 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 315
PciI ACATGT 1 cut(s) 222
PfeI GAWTC 2 cut(s) 7, 20
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 293, 326
PpsI GAGTC 2 cut(s) 293, 326
Ppu21I YACGTR 1 cut(s) 170
PscI ACATGT 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 264
PspXI VCTCGAGB 1 cut(s) 315
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 6 cut(s) 91, 208, 262, 282, 289, 322
SchI GAGTC 2 cut(s) 293, 327
SetI ASST 4 cut(s) 70, 130, 172, 313
Sfr274I CTCGAG 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 2 cut(s) 200, 330
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 120
TaiI ACGT 1 cut(s) 172
TaqI TCGA 3 cut(s) 281, 316, 321
TasI AATT 2 cut(s) 200, 330
TfiI GAWTC 2 cut(s) 7, 20
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 3 cut(s) 45, 86, 251
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 3 cut(s) 45, 86, 251
TspRI CASTG 1 cut(s) 263
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 315
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.