Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

12969017 .. 12971147

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATTGGGCCATTTGGGCTTTGTACTTAAAAGGCTTATCCCGCCAAGATAAGGATAAAGATAAAGGGCAGTGTACGACTATAAAAGGCAACGAAAACCTCCGTTTAGGGCAAATCCCATATCCCTCAAATCCCAAATTTCCCAAGCTAGAGACTATGACGGACACCAAAACGGAACGAGCGTTCTACAGCAGGTCCGATATGAGCGATCTGGATTCCAGCGAAGAGTATGTCAGCGAACTAGATTTCAGCGACTCGGATCTCAGCGACCCGGACATCCCCGACAAACAGATCGACGGCGACAAGCAGATCGACGGCGGCAAACAGATGGTGACTGATAAAGGGGAATCCCAAACGTCTTCTAAAAAGTCACGTAAACGAAAACGAAATTCTTCTCGCTGCACCTGCTGCACCTGTCCCCGACACCCTGTCAAAATGGCCAAAACTGAGAAGCGCCCTCTACCGAAGGGATATGGTTATGTTCCTTGGCTATCGGTGGGTAGGATAGGTCCCTACCATCCAAGTTTTACCAATCAAATTGGTTACATGACTTGTGCCCGTTGTGGTATCAATGGTGACCACTGGGAACCATTTTGCACAAATCCAATCAATGATGCGCCAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.7

Weight (kDa)

7.51

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	2 cut(s)	183, 413
AciI	CCGC	2 cut(s)	43, 318
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	137, 388
AfaI	GTAC	2 cut(s)	26, 76
AfiI	CCNNNNNNNGG	1 cut(s)	52
AhdI	GACNNNNNGTC	1 cut(s)	428
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	9, 438
ApeKI	GCWGC	2 cut(s)	399, 408
ApoI	RAATTY	2 cut(s)	137, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	456, 619
AspS9I	GGNCC	3 cut(s)	9, 195, 509
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	343, 587
AvaII	GGWCC	2 cut(s)	195, 509
BaeGI	GKGCMC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	386, 395
BccI	CCATC	2 cut(s)	322, 525
BceAI	ACGGC	2 cut(s)	313, 331
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	149, 242
BfmI	CTRYAG	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	2 cut(s)	183, 413
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	319, 400, 409
BlsI	GCNGC	3 cut(s)	320, 401, 410
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	195, 509
BmeRI	GACNNNNNGTC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	9, 195, 509
BmiI	GGNNCC	2 cut(s)	511, 588
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	587
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	2 cut(s)	276, 517
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	277, 438
BseNI	ACTGG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	386, 395
BsgI	GTGCAG	2 cut(s)	385, 394
BshFI	GGCC	2 cut(s)	11, 440
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	402, 495
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	402, 495
BsnI	GGCC	2 cut(s)	11, 440
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	208, 259, 291, 309
BspACI	CCGC	2 cut(s)	43, 318
BspANI	GGCC	2 cut(s)	11, 440
BspCNI	CTCAG	2 cut(s)	276, 439
BspLI	GGNNCC	2 cut(s)	511, 588
BspMI	ACCTGC	2 cut(s)	183, 413
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	4 cut(s)	208, 259, 291, 309
BssT1I	CCWWGG	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	263, 447
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	276, 517
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	456, 619
BstKTI	GATC	4 cut(s)	211, 262, 294, 312
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	208, 259, 291, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 42, 405, 408
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	386, 395
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	11, 440
BtsCI	GGATG	2 cut(s)	276, 517
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 580
BveI	ACCTGC	2 cut(s)	183, 413
CfoI	GCGC	2 cut(s)	456, 619
Cfr13I	GGNCC	3 cut(s)	9, 195, 509
Csp6I	GTAC	2 cut(s)	25, 75
CviAII	CATG	1 cut(s)	547
CviJI	RGCY	6 cut(s)	11, 20, 36, 148, 440, 490
CviKI_1	RGCY	6 cut(s)	11, 20, 36, 148, 440, 490
CviQI	GTAC	2 cut(s)	25, 75
DdeI	CTNAG	2 cut(s)	263, 447
DpnI	GATC	4 cut(s)	210, 261, 293, 311
DpnII	GATC	4 cut(s)	208, 259, 291, 309
DriI	GACNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	485
Eco47I	GGWCC	2 cut(s)	195, 509
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	1 cut(s)	550
FaiI	YATR	8 cut(s)	83, 121, 158, 203, 231, 474, 480, 548
FaqI	GGGAC	2 cut(s)	402, 495
FatI	CATG	1 cut(s)	546
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	319, 400, 409
FokI	GGATG	2 cut(s)	263, 504
Fsp4HI	GCNGC	3 cut(s)	319, 400, 409
FspBI	CTAG	2 cut(s)	149, 242
GlaI	GCGC	2 cut(s)	455, 618
GluI	GCNGC	3 cut(s)	319, 400, 409
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	11, 440
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	2 cut(s)	456, 619
Hin1II	CATG	1 cut(s)	550
Hin6I	GCGC	2 cut(s)	454, 617
HinP1I	GCGC	2 cut(s)	454, 617
HinfI	GANTC	3 cut(s)	215, 254, 347
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	343, 587
Hpy166II	GTNNAC	2 cut(s)	75, 377
Hpy188I	TCNGA	2 cut(s)	199, 259
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	75, 377
Hpy99I	CGWCG	2 cut(s)	299, 317
HpyAV	CCTTC	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	356, 373
HpyCH4V	TGCA	3 cut(s)	402, 411, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 42, 405, 408
HpyF3I	CTNAG	2 cut(s)	263, 447
HpySE526I	ACGT	2 cut(s)	356, 373
Hsp92II	CATG	1 cut(s)	550
HspAI	GCGC	2 cut(s)	454, 617
Kzo9I	GATC	4 cut(s)	208, 259, 291, 309
LpnPI	CCDG	8 cut(s)	178, 197, 232, 285, 418, 427, 441, 568
Lsp1109I	GCAGC	2 cut(s)	386, 395
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	149, 242
MaeII	ACGT	2 cut(s)	356, 373
MaeIII	GTNAC	4 cut(s)	331, 369, 542, 575
MalI	GATC	4 cut(s)	210, 261, 293, 311
MboI	GATC	4 cut(s)	208, 259, 291, 309
MboII	GAAGA	3 cut(s)	236, 351, 384
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	3 cut(s)	137, 388, 537
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	110, 136, 468
Mox20I	TGGCCA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	17, 42, 405, 408
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	4 cut(s)	208, 259, 291, 309
NlaIII	CATG	1 cut(s)	550
NlaIV	GGNNCC	2 cut(s)	511, 588
NmuCI	GTSAC	3 cut(s)	331, 369, 575
PaqCI	CACCTGC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	215, 347
PkrI	GCNGC	3 cut(s)	320, 401, 410
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	509
PspEI	GGTNACC	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	511, 588
PspPI	GGNCC	3 cut(s)	9, 195, 509
PspPPI	RGGWCCY	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	2 cut(s)	26, 76
RsaNI	GTAC	2 cut(s)	25, 75
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	319, 400, 409
Sau3AI	GATC	4 cut(s)	208, 259, 291, 309
Sau96I	GGNCC	3 cut(s)	9, 195, 509
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	8 cut(s)	102, 150, 197, 359, 376, 407, 416, 511
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	195, 509
Sse9I	AATT	3 cut(s)	137, 388, 537
SsiI	CCGC	2 cut(s)	43, 318
SspMI	CTAG	2 cut(s)	149, 242
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	485
TaiI	ACGT	2 cut(s)	359, 376
TaqI	TCGA	2 cut(s)	294, 312
TasI	AATT	3 cut(s)	137, 388, 537
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	215, 347
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	77, 587
TseFI	GTSAC	3 cut(s)	331, 369, 575
TseI	GCWGC	2 cut(s)	399, 408
Tsp45I	GTSAC	3 cut(s)	331, 369, 575
TspGWI	ACGGA	3 cut(s)	92, 176, 188
TspRI	CASTG	2 cut(s)	77, 587
VpaK11BI	GGWCC	2 cut(s)	195, 509
XapI	RAATTY	2 cut(s)	137, 388
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	2 cut(s)	149, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.