Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

26427048 .. 26428490

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAGAAATCGAAGCGGACCGGCGTGTTGAATCCGATGAGGTCGGCACCATCGACCGCGGCAAACAGATGGAGATTGATAAAGGGGAATCGCAACCACCATGTACAAAGTCACGATATCGAAAACGAAAACGAAATGCTCATTGTTGTTGCACGTGTCATGATCCCAAAACCCGACGCCGCGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTTCGGCAATATGTGTGGATAAGAATGGTAACTACATTCCAAGATTTTCTGATCGTGTTGCTTACATGTCTTGTCACCGTTGTGGTATGAAGGGTGACCACTGGGATCCATTTTGCCCCAACTCGACCAATGATCCGCCAGACTCAGGAGAAGCTGCTCCTACCCGTAACCCGTCATGGAATTATATATTGAGGAATTTCAATTTGAAAGAATATCTTGAGAAAAAGAATAAGACTGATGGGAAACCAGAACCACCACGGAGGAAGGCGGTGAAATCAAAAGTGTCCAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.94

Weight (kDa)

9.45

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	2 cut(s)	60, 183
AciI	CCGC	6 cut(s)	17, 58, 60, 181, 365, 497
AclWI	GGATC	4 cut(s)	158, 329, 342, 356
AcsI	RAATTY	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	192, 374
AflIII	ACRYGT	2 cut(s)	155, 294
AgsI	TTSAA	3 cut(s)	32, 430, 436
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
AlwI	GGATC	4 cut(s)	158, 329, 342, 356
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	296, 335, 511
AvaII	GGWCC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	47
BbrPI	CACGTG	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	59, 64, 461
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	61, 181, 384
BlsI	GCNGC	3 cut(s)	62, 182, 385
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	49, 336
BmrI	ACTGGG	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	58, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 374
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	58, 485
BseLI	CCNNNNNNNGG	2 cut(s)	192, 374
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	2 cut(s)	60, 183
Bsh1285I	CGRYCG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	192, 374
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	163, 280, 334, 361
BspACI	CCGC	6 cut(s)	17, 58, 60, 181, 365, 497
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	2 cut(s)	60, 183
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	49, 336
BspPI	GGATC	4 cut(s)	158, 329, 342, 356
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	58, 485
BssMI	GATC	4 cut(s)	163, 280, 334, 361
BssNI	GRCGYC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	2 cut(s)	58, 485
BstEII	GGTNACC	1 cut(s)	323
BstFNI	CGCG	2 cut(s)	60, 183
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	166, 283, 337, 364
BstMBI	GATC	4 cut(s)	163, 280, 334, 361
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	323
BstUI	CGCG	2 cut(s)	60, 183
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	2 cut(s)	58, 485
BtsIMutI	CAGTG	1 cut(s)	328
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	19
Cfr42I	CCGCGG	1 cut(s)	61
CpoI	CGGWCCG	1 cut(s)	19
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CspI	CGGWCCG	1 cut(s)	19
CviAII	CATG	4 cut(s)	102, 161, 295, 405
CviJI	RGCY	1 cut(s)	383
CviKI_1	RGCY	1 cut(s)	383
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	4 cut(s)	165, 282, 336, 363
DpnII	GATC	4 cut(s)	163, 280, 334, 361
EciI	GGCGGA	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	19
Eco72I	CACGTG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	119
FaeI	CATG	4 cut(s)	105, 164, 298, 408
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	4 cut(s)	101, 160, 294, 404
Fnu4HI	GCNGC	3 cut(s)	61, 181, 384
Fsp4HI	GCNGC	3 cut(s)	61, 181, 384
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	61, 181, 384
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	105, 164, 298, 408
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	32, 89, 371
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	296, 335, 511
Hpy188I	TCNGA	2 cut(s)	37, 280
Hpy188III	TCNNGA	4 cut(s)	114, 161, 375, 446
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	240, 313, 487
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	105, 164, 298, 408
HspAI	GCGC	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	163, 280, 334, 361
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	6 cut(s)	35, 222, 316, 360, 381, 489
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	5 cut(s)	111, 257, 302, 323, 395
MalI	GATC	4 cut(s)	165, 282, 336, 363
MboI	GATC	4 cut(s)	163, 280, 334, 361
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	3 cut(s)	409, 424, 430
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	34, 205, 210, 414, 483
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	22
MvnI	CGCG	2 cut(s)	60, 183
NdeII	GATC	4 cut(s)	163, 280, 334, 361
NlaIII	CATG	4 cut(s)	105, 164, 298, 408
NlaIV	GGNNCC	2 cut(s)	49, 336
NmuCI	GTSAC	3 cut(s)	111, 302, 323
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	309
PagI	TCATGA	1 cut(s)	160
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	32, 89
PkrI	GCNGC	3 cut(s)	62, 182, 385
PleI	GAGTC	1 cut(s)	365
PmaCI	CACGTG	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	365
Ppu21I	YACGTR	1 cut(s)	156
PscI	ACATGT	1 cut(s)	294
PspCI	CACGTG	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	49, 336
PspPI	GGNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	309
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	61
SatI	GCNGC	3 cut(s)	61, 181, 384
Sau3AI	GATC	4 cut(s)	163, 280, 334, 361
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	365
SetI	ASST	4 cut(s)	45, 158, 202, 385
Sfr303I	CCGCGG	1 cut(s)	61
SgrBI	CCGCGG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	409, 424, 430
SsiI	CCGC	6 cut(s)	17, 58, 60, 181, 365, 497
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	4 cut(s)	12, 54, 121, 353
TasI	AATT	3 cut(s)	409, 424, 430
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	2 cut(s)	63, 183
TfiI	GAWTC	2 cut(s)	32, 89
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	3 cut(s)	111, 302, 323
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	3 cut(s)	111, 302, 323
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.