Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

26341886 .. 26342383

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTATATTTCTTATTAATATTATGTTCCGTTCCTCATCTCTTGGTTTTCCGATCTCATCAGGGGAATCGCAAACACCATGTACAAAGTCACGAAAACGAAAACGAAATGCTCATTGTTGTTGCACGTGTCATGAACCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTTCGGCAATATGTGTGGATAAGAATGGTAACTACATTCCAAGATTTTCTGATCGTGTTGCTTACATGTCTTGTCACCGTTGTGGTATGAAGGGTGACCACTGGGATCCATTTTGCCCCAACTCGATCAATGATCCGCCGGACTCAGGAGAAGCTGCTCCTACCCGTAACCCGTCATGGAATTATATATTGAGGAATTTCAACCTGAAAGAATATCTTGAGAAAAAGAATAAGACTGATGGGAAACCAGAACCACCACGGAGGAAGGCGGTGAAATCAAAAGTGTCCAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.76

Weight (kDa)

9.8

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	338, 470
AclWI	GGATC	3 cut(s)	302, 315, 329
AcsI	RAATTY	1 cut(s)	397
AcvI	CACGTG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	151
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	165, 347
AflIII	ACRYGT	2 cut(s)	128, 267
AgsI	TTSAA	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	3 cut(s)	302, 315, 329
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	397
AseI	ATTAAT	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	269, 308, 484
BamHI	GGATCC	1 cut(s)	307
BbrPI	CACGTG	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 347
Bse1I	ACTGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	458
BseLI	CCNNNNNNNGG	2 cut(s)	165, 347
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	165, 347
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	5 cut(s)	54, 253, 307, 327, 334
BspACI	CCGC	2 cut(s)	338, 470
BspCNI	CTCAG	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	302, 315, 329
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	5 cut(s)	54, 253, 307, 327, 334
BssNI	GRCGYC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	458
BstEII	GGTNACC	1 cut(s)	296
BstKTI	GATC	5 cut(s)	57, 256, 310, 330, 337
BstMBI	GATC	5 cut(s)	54, 253, 307, 327, 334
BstNSI	RCATGY	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	133
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	4 cut(s)	81, 134, 268, 378
CviJI	RGCY	2 cut(s)	5, 356
CviKI_1	RGCY	2 cut(s)	5, 356
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	5 cut(s)	56, 255, 309, 329, 336
DpnII	GATC	5 cut(s)	54, 253, 307, 327, 334
EciI	GGCGGA	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
FaeI	CATG	4 cut(s)	84, 137, 271, 381
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	4 cut(s)	80, 133, 267, 377
Fnu4HI	GCNGC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	357
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	84, 137, 271, 381
HinfI	GANTC	2 cut(s)	68, 344
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	269, 308, 484
Hpy188I	TCNGA	2 cut(s)	54, 253
Hpy188III	TCNNGA	4 cut(s)	93, 134, 348, 419
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	213, 286, 460
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	84, 137, 271, 381
Kzo9I	GATC	5 cut(s)	54, 253, 307, 327, 334
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	7 cut(s)	48, 195, 289, 333, 354, 419, 462
Lsp1109I	GCAGC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	5 cut(s)	90, 230, 275, 296, 368
MalI	GATC	5 cut(s)	56, 255, 309, 329, 336
MboI	GATC	5 cut(s)	54, 253, 307, 327, 334
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	2 cut(s)	382, 397
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	5 cut(s)	46, 178, 183, 387, 456
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	1 cut(s)	341
NdeII	GATC	5 cut(s)	54, 253, 307, 327, 334
NlaIII	CATG	4 cut(s)	84, 137, 271, 381
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	90, 275, 296
NspI	RCATGY	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	282
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	338
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	129
PscI	ACATGT	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	5 cut(s)	54, 253, 307, 327, 334
SchI	GAGTC	1 cut(s)	338
SetI	ASST	4 cut(s)	131, 175, 358, 408
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	382, 397
SsiI	CCGC	2 cut(s)	338, 470
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	326
TasI	AATT	2 cut(s)	382, 397
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	3 cut(s)	90, 275, 296
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	3 cut(s)	90, 275, 296
TspDTI	ATGAA	2 cut(s)	150, 305
TspGWI	ACGGA	2 cut(s)	20, 475
TspRI	CASTG	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.