Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

25569298 .. 25570264

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAGGAATCGAAGCCACCATCGCCCGCGGCACACAGATCGACGGCGGCAAACAGATGGAGATTTGTAAAGGGGAATCGCAAACACCATGTAGTGCAAAGTCACGAAAACGAAAACGAAAAGCTCATTGTTGTTGCACTTGTCATGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTGCTTTACCAGAGGGATTTGGTTATATTCCCATGCCAGTACGTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTACATGTCTTGTCGCCGTTGTGGTATGAGGGGTGACCACTGGGATCCCTTTTGCCCCAACTCGATCAATGATCCGCCAGACTCGGGAGAAGCTGCTCGAGTCACGGGCAGGTCATGGAATTACATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGAACAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

9.55

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	193, 375
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 30, 48, 350
AclWI	GGATC	4 cut(s)	143, 314, 327, 341
AcsI	RAATTY	2 cut(s)	257, 409
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	177, 359
AflIII	ACRYGT	2 cut(s)	226, 279
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	2 cut(s)	125, 368
AluI	AGCT	2 cut(s)	125, 368
AlwI	GGATC	4 cut(s)	143, 314, 327, 341
Ama87I	CYCGRG	2 cut(s)	358, 372
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	257, 409
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	358, 372
BamHI	GGATCC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	29, 52
BceAI	ACGGC	3 cut(s)	61, 150, 276
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	2 cut(s)	193, 375
BisI	GCNGC	3 cut(s)	31, 49, 369
BlsI	GCNGC	3 cut(s)	32, 50, 370
BmeT110I	CYCGRG	2 cut(s)	358, 372
BmiI	GGNNCC	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 359
Bse1I	ACTGG	2 cut(s)	221, 320
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	177, 359
BseNI	ACTGG	2 cut(s)	221, 320
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	30
BsiHKCI	CYCGRG	2 cut(s)	358, 372
BslI	CCNNNNNNNGG	2 cut(s)	177, 359
BsoBI	CYCGRG	2 cut(s)	358, 372
Bsp143I	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
BspACI	CCGC	4 cut(s)	28, 30, 48, 350
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	2 cut(s)	193, 375
BspPI	GGATC	4 cut(s)	143, 314, 327, 341
BsrI	ACTGG	2 cut(s)	221, 320
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
BssNI	GRCGYC	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	6 cut(s)	42, 151, 268, 322, 342, 349
BstMBI	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	193, 375
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	145
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	90, 146, 217, 280, 390
CviJI	RGCY	3 cut(s)	17, 125, 368
CviKI_1	RGCY	3 cut(s)	17, 125, 368
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	6 cut(s)	41, 150, 267, 321, 341, 348
DpnII	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
EciI	GGCGGA	1 cut(s)	339
Eco88I	CYCGRG	2 cut(s)	358, 372
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
FaeI	CATG	5 cut(s)	93, 149, 220, 283, 393
FaiI	YATR	8 cut(s)	91, 147, 210, 218, 281, 302, 391, 401
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	5 cut(s)	89, 145, 216, 279, 389
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	31, 49, 369
Fsp4HI	GCNGC	3 cut(s)	31, 49, 369
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	3 cut(s)	31, 49, 369
HgaI	GACGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	93, 149, 220, 283, 393
HinfI	GANTC	4 cut(s)	9, 77, 356, 375
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	265, 420
Hpy188III	TCNNGA	5 cut(s)	105, 146, 254, 360, 431
Hpy99I	CGWCG	2 cut(s)	47, 165
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	98, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	5 cut(s)	93, 149, 220, 283, 393
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
LpnPI	CCDG	7 cut(s)	198, 207, 234, 267, 301, 366, 370
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	4 cut(s)	102, 242, 308, 376
MalI	GATC	6 cut(s)	41, 150, 267, 321, 341, 348
MboI	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	3 cut(s)	257, 394, 409
MlyI	GAGTC	2 cut(s)	350, 384
MnlI	CCTC	3 cut(s)	190, 297, 399
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
NlaIII	CATG	5 cut(s)	93, 149, 220, 283, 393
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	3 cut(s)	102, 308, 376
NspI	RCATGY	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	372
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	9, 77
PkrI	GCNGC	3 cut(s)	32, 50, 370
PleI	GAGTC	2 cut(s)	350, 383
PpsI	GAGTC	2 cut(s)	350, 383
Ppu21I	YACGTR	1 cut(s)	227
PscI	ACATGT	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	3 cut(s)	31, 49, 369
Sau3AI	GATC	6 cut(s)	39, 148, 265, 319, 339, 346
SchI	GAGTC	2 cut(s)	350, 384
SetI	ASST	5 cut(s)	127, 187, 229, 370, 389
Sfr274I	CTCGAG	1 cut(s)	372
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	257, 394, 409
SsiI	CCGC	4 cut(s)	28, 30, 48, 350
SspMI	CTAG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	4 cut(s)	12, 42, 338, 373
TasI	AATT	3 cut(s)	257, 394, 409
TauI	GCSGC	2 cut(s)	33, 51
TfiI	GAWTC	2 cut(s)	9, 77
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	3 cut(s)	102, 308, 376
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	3 cut(s)	102, 308, 376
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	257, 409
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.