Rroxscaffold_2G00129910

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
65999266 .. 66000589
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129910.1

Sequence Viewer

Length: 255 bp
ATGGCAGAAATCGAAGCCACCATCGCCCGCCGCAAACAGATCGACGGCGGCAAACAGATGGAGATTCATAAAGGGGAATCGCAAACACCATGTAGTACAAAGTCACGAAAACGAAAACGAAAACGAAATGCTCATTGTTGTTGCACTTGTCATGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTATGCCAGTACGTGTGGATAAGAATGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.6

Weight (kDa)

10.3

Isoelectric Point (pI)

84.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 28, 31, 48
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 2 cut(s) 97, 231
AfiI CCNNNNNNNGG 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 232
AlwI GGATC 1 cut(s) 149
BccI CCATC 2 cut(s) 29, 52
BceAI ACGGC 2 cut(s) 61, 156
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BfaI CTAG 2 cut(s) 183, 253
BisI GCNGC 2 cut(s) 31, 49
BlsI GCNGC 2 cut(s) 32, 50
BsaAI YACGTR 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 183
Bsp143I GATC 2 cut(s) 39, 154
BspACI CCGC 3 cut(s) 28, 31, 48
BspHI TCATGA 1 cut(s) 151
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 227
BssMI GATC 2 cut(s) 39, 154
BssNI GRCGYC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 42, 157
BstMBI GATC 2 cut(s) 39, 154
BstMWI GCNNNNNNNGC 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 151
CseI GACGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 96, 230
CviAII CATG 2 cut(s) 90, 152
CviJI RGCY 1 cut(s) 17
CviKI_1 RGCY 1 cut(s) 17
CviQI GTAC 2 cut(s) 96, 230
DpnI GATC 2 cut(s) 41, 156
DpnII GATC 2 cut(s) 39, 154
FaeI CATG 2 cut(s) 93, 155
FaiI YATR 5 cut(s) 69, 91, 153, 216, 224
FatI CATG 2 cut(s) 89, 151
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 31, 49
Fsp4HI GCNGC 2 cut(s) 31, 49
FspBI CTAG 2 cut(s) 183, 253
GluI GCNGC 2 cut(s) 31, 49
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 2 cut(s) 93, 155
HinfI GANTC 2 cut(s) 64, 77
Hpy188III TCNNGA 2 cut(s) 105, 152
Hpy99I CGWCG 2 cut(s) 47, 171
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 232
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 93, 155
Kzo9I GATC 2 cut(s) 39, 154
LpnPI CCDG 2 cut(s) 213, 240
MaeI CTAG 2 cut(s) 183, 253
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 102, 248
MalI GATC 2 cut(s) 41, 156
MboI GATC 2 cut(s) 39, 154
MnlI CCTC 2 cut(s) 196, 201
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 39, 154
NlaIII CATG 2 cut(s) 93, 155
NmuCI GTSAC 1 cut(s) 102
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 2 cut(s) 64, 77
PkrI GCNGC 2 cut(s) 32, 50
Ppu21I YACGTR 1 cut(s) 233
RsaI GTAC 2 cut(s) 97, 231
RsaNI GTAC 2 cut(s) 96, 230
SatI GCNGC 2 cut(s) 31, 49
Sau3AI GATC 2 cut(s) 39, 154
SetI ASST 2 cut(s) 193, 235
SsiI CCGC 3 cut(s) 28, 31, 48
SspMI CTAG 2 cut(s) 183, 253
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 12, 42
TatI WGTACW 1 cut(s) 95
TauI GCSGC 2 cut(s) 33, 51
TfiI GAWTC 2 cut(s) 64, 77
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 56
XspI CTAG 2 cut(s) 183, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.