Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Reverse (-)

24985059 .. 24985656

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGAAATCGAAGCCACCATCGCCCGCGGCACACAGATCGACGGCGGCAAACAGATGGAGATTCATGAAGGGGAATCGCAAACACCATGTAGTGCAAAGTCAGGAAAACGAAAACGAAAAGCTCATTGTTGTTGTTGCACTTGTCATGATCCCAAAACCCGACGCCGTGCCAAAACTAGGAAACCTCCTTTACCAGAGGGATTTGGTTATGTTCCTTCGGCAATATGTGTGGATAAGAATGGTAACTACATTCCAAGATTTTCTGATCGTGTTGCTTACATGTCTTGTCACCGTTGTGGTATGAAGGGTGACCACTGGGATCCATTTTGCCCCAACTCGATCAATGATCCGCCAGACTCAGGAGAAGCTGCTCCTACCCGTAACCCGTCATGGAATTATATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGAATAAGACTGATGGGAAACCAGAGAACCACCACGGAGGAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.38

Weight (kDa)

9.21

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AciI	CCGC	5 cut(s)	28, 30, 48, 353, 487
AclWI	GGATC	4 cut(s)	146, 317, 330, 344
AcsI	RAATTY	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	180, 362
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	125, 371
AluI	AGCT	2 cut(s)	125, 371
AlwI	GGATC	4 cut(s)	146, 317, 330, 344
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	284, 323
BamHI	GGATCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	29, 52, 449
BceAI	ACGGC	2 cut(s)	61, 153
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	31, 49, 372
BlsI	GCNGC	3 cut(s)	32, 50, 373
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	28, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 362
Bse1I	ACTGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	28, 475
BseLI	CCNNNNNNNGG	2 cut(s)	180, 362
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	180, 362
Bsp143I	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
BspACI	CCGC	5 cut(s)	28, 30, 48, 353, 487
BspCNI	CTCAG	1 cut(s)	374
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	2 cut(s)	67, 148
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	4 cut(s)	146, 317, 330, 344
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	28, 475
BssMI	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
BssNI	GRCGYC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	2 cut(s)	28, 475
BstEII	GGTNACC	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	6 cut(s)	42, 154, 271, 325, 345, 352
BstMBI	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	311
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgI	CCRYGG	2 cut(s)	28, 475
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	2 cut(s)	67, 148
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	1 cut(s)	174
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	5 cut(s)	68, 90, 149, 283, 393
CviJI	RGCY	3 cut(s)	17, 125, 371
CviKI_1	RGCY	3 cut(s)	17, 125, 371
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	6 cut(s)	41, 153, 270, 324, 344, 351
DpnII	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
EciI	GGCGGA	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
FaeI	CATG	5 cut(s)	71, 93, 152, 286, 396
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	5 cut(s)	67, 89, 148, 282, 392
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	31, 49, 372
Fsp4HI	GCNGC	3 cut(s)	31, 49, 372
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	3 cut(s)	31, 49, 372
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	71, 93, 152, 286, 396
HinfI	GANTC	3 cut(s)	64, 77, 359
HphI	GGTGA	2 cut(s)	284, 323
Hpy188I	TCNGA	2 cut(s)	268, 423
Hpy188III	TCNNGA	5 cut(s)	68, 105, 149, 363, 434
Hpy99I	CGWCG	2 cut(s)	47, 168
HpyAV	CCTTC	4 cut(s)	65, 228, 301, 477
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	98, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	5 cut(s)	71, 93, 152, 286, 396
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	90, 210, 304, 348, 369, 477
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	4 cut(s)	245, 290, 311, 383
MalI	GATC	6 cut(s)	41, 153, 270, 324, 344, 351
MboI	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	2 cut(s)	397, 412
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	193, 198, 402, 473
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
NlaIII	CATG	5 cut(s)	71, 93, 152, 286, 396
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	290, 311
NspI	RCATGY	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	2 cut(s)	67, 148
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	64, 77
PkrI	GCNGC	3 cut(s)	32, 50, 373
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PscI	ACATGT	1 cut(s)	282
PspEI	GGTNACC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	297
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	3 cut(s)	31, 49, 372
Sau3AI	GATC	6 cut(s)	39, 151, 268, 322, 342, 349
SchI	GAGTC	1 cut(s)	353
SetI	ASST	3 cut(s)	127, 190, 373
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	397, 412
SsiI	CCGC	5 cut(s)	28, 30, 48, 353, 487
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	12, 42, 341
TasI	AATT	2 cut(s)	397, 412
TauI	GCSGC	2 cut(s)	33, 51
TfiI	GAWTC	2 cut(s)	64, 77
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	2 cut(s)	290, 311
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	290, 311
TspDTI	ATGAA	3 cut(s)	56, 84, 320
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.