FvH4_1g26790

NifU-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003568
Physical Location & Seq
Reverse (-)
18642485 .. 18644405
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26790.t1

Sequence Viewer

Length: 660 bp
ATGGCGTCTCTCACAACCTCCTGGTTGCCCAAAACCCCAATTCCTTCTCCCCAAATCCCAGCCAAATCCCATCAATCCCCACAATTCATGCTTGTAAAACGAACAAGGATCTTTCTGGGTTCCTCCGTTAGAGCTTCCAACTCTAGTGCTGCCGCCGAGTCTTCCTCTTCCTCTTCTTCTTCTTCTCCGGGTCTCTACTCGGCCAAGCAATTCGACCTCACAGTTCCCAACGTCGACATGGTTCTCGAAGACGTGCGCCCCTATCTCATCGCCGATGGCGGAAACGTCGACGTTGTGTCTGTCGAGGACGGCGTCGTTTCTCTCAAACTCCAAGGGGCTTGTGGAAGCTGTCCTAGCTCAACCACCACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAGAAGTTTGGAGATGCACTCAAGGATATTCAACAAGTGTTTGATGAAGAAAACAGGGAGACCACAGTTGAGGCAGTGAATGGTCATCTCGATATATTGAGGCCGGCGATAAAGAACTTTGGTGGGAGTGTGGAAGTGTTATCAGTTGAAGGTGGAGATTGCCATGTAAAATACGTAGGGCCTGACTCCATTGGATCAGGAATCAGAGCTGCTATTAAGGAGAAGTTCCCAGATATCGTCAATGTTGTGTTTACCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NifU

Protein Analysis

220

Amino Acids

23.26

Weight (kDa)

5.43

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NifU PF01106 78 - 138 6.2e-24 NifU-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 234, 288
AciI CCGC 2 cut(s) 153, 279
AclWI GGATC 2 cut(s) 116, 601
AcoI YGGCCR 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 5, 312
AgsI TTSAA 3 cut(s) 386, 431, 548
AhdI GACNNNNNGTC 1 cut(s) 295
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 134, 348, 357, 608
AluI AGCT 4 cut(s) 134, 348, 357, 608
Alw26I GTCTC 3 cut(s) 12, 197, 452
AlwI GGATC 2 cut(s) 116, 601
AoxI GGCC 3 cut(s) 201, 500, 578
ApeKI GCWGC 2 cut(s) 149, 608
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 153, 255
BbvI GCAGC 2 cut(s) 136, 595
BccI CCATC 2 cut(s) 78, 269
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 12, 197, 452
BfaI CTAG 2 cut(s) 144, 354
BisI GCNGC 3 cut(s) 150, 153, 609
BlsI GCNGC 3 cut(s) 151, 154, 610
Bme1390I CCNGG 2 cut(s) 22, 189
BmeRI GACNNNNNGTC 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 22, 189
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 2 cut(s) 153, 255
BplI GAGNNNNNCTC 4 cut(s) 149, 181, 402, 434
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 574
BsaHI GRCGYC 2 cut(s) 5, 312
BsaI GGTCTC 2 cut(s) 197, 452
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 1 cut(s) 653
Bse118I RCCGGY 1 cut(s) 502
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 136, 595
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 3 cut(s) 203, 502, 580
BsiSI CCGG 3 cut(s) 188, 503, 654
BsmAI GTCTC 3 cut(s) 12, 197, 452
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 3 cut(s) 203, 502, 580
Bso31I GGTCTC 2 cut(s) 197, 452
Bsp143I GATC 2 cut(s) 108, 593
BspACI CCGC 2 cut(s) 153, 279
BspANI GGCC 3 cut(s) 203, 502, 580
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 116, 601
BspTNI GGTCTC 2 cut(s) 197, 452
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 108, 593
BssNI GRCGYC 2 cut(s) 5, 312
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 223, 466
Bst6I CTCTTC 2 cut(s) 172, 178
BstACI GRCGYC 2 cut(s) 5, 312
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 504
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 111, 596
BstMAI GTCTC 3 cut(s) 12, 197, 452
BstMBI GATC 2 cut(s) 108, 593
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 20, 187
BstSNI TACGTA 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 136, 595
BstV2I GAAGAC 2 cut(s) 153, 255
BstX2I RGATCY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 3 cut(s) 203, 502, 580
BtgZI GCGATG 1 cut(s) 253
BtrI CACGTC 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 504
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 578
CseI GACGC 1 cut(s) 301
CviAII CATG 4 cut(s) 88, 238, 370, 563
CviJI RGCY 9 cut(s) 62, 134, 203, 338, 348, 357, 502, 580, 608
CviKI_1 RGCY 9 cut(s) 62, 134, 203, 338, 348, 357, 502, 580, 608
DpnI GATC 2 cut(s) 110, 595
DpnII GATC 2 cut(s) 108, 593
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 172, 178
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 172, 178
EciI GGCGGA 1 cut(s) 294
Eco105I TACGTA 1 cut(s) 574
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 2 cut(s) 197, 452
Eco32I GATATC 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 20
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 4 cut(s) 91, 241, 373, 566
FaiI YATR 5 cut(s) 89, 239, 371, 494, 564
FatI CATG 4 cut(s) 87, 237, 369, 562
FblI GTMKAC 2 cut(s) 234, 288
Fnu4HI GCNGC 3 cut(s) 150, 153, 609
Fsp4HI GCNGC 3 cut(s) 150, 153, 609
FspBI CTAG 2 cut(s) 144, 354
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 150, 153, 609
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 3 cut(s) 203, 502, 580
HapII CCGG 3 cut(s) 188, 503, 654
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 5, 312
Hin1II CATG 4 cut(s) 91, 241, 373, 566
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 2 cut(s) 235, 289
HindII GTYRAC 2 cut(s) 235, 289
HinfI GANTC 3 cut(s) 158, 584, 600
HpaII CCGG 3 cut(s) 188, 503, 654
Hpy166II GTNNAC 3 cut(s) 235, 289, 651
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 3 cut(s) 245, 488, 597
Hpy8I GTNNAC 3 cut(s) 235, 289, 651
Hpy99I CGWCG 4 cut(s) 236, 290, 293, 317
HpyAV CCTTC 2 cut(s) 54, 542
HpyCH4III ACNGT 2 cut(s) 223, 466
HpyCH4IV ACGT 5 cut(s) 231, 252, 285, 291, 573
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpySE526I ACGT 5 cut(s) 231, 252, 285, 291, 573
Hsp92I GRCGYC 2 cut(s) 5, 312
Hsp92II CATG 4 cut(s) 91, 241, 373, 566
HspAI GCGC 1 cut(s) 256
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 2 cut(s) 108, 593
Lsp1109I GCAGC 2 cut(s) 136, 595
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 144, 354
MaeII ACGT 5 cut(s) 231, 252, 285, 291, 573
MalI GATC 2 cut(s) 110, 595
MboI GATC 2 cut(s) 108, 593
MboII GAAGA 8 cut(s) 153, 159, 165, 168, 171, 174, 260, 458
MflI RGATCY 1 cut(s) 108
MluCI AATT 3 cut(s) 39, 83, 209
MlyI GAGTC 2 cut(s) 167, 578
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 28, 133, 175, 181, 227, 298, 463, 492
MroNI GCCGGC 1 cut(s) 502
MseI TTAA 2 cut(s) 396, 615
MslI CAYNNNNRTG 2 cut(s) 368, 374
MspI CCGG 3 cut(s) 188, 503, 654
MspR9I CCNGG 2 cut(s) 22, 189
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 354
NaeI GCCGGC 1 cut(s) 504
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 108, 593
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 4 cut(s) 91, 241, 373, 566
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 2 cut(s) 179, 181
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 600
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 3 cut(s) 151, 154, 610
PleI GAGTC 2 cut(s) 166, 578
PpsI GAGTC 2 cut(s) 166, 578
Ppu21I YACGTR 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 578
PsuI RGATCY 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 311
RseI CAYNNNNRTG 2 cut(s) 368, 374
SalI GTCGAC 2 cut(s) 233, 287
SaqAI TTAA 2 cut(s) 396, 615
SatI GCNGC 3 cut(s) 150, 153, 609
Sau3AI GATC 2 cut(s) 108, 593
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 167, 578
ScrFI CCNGG 2 cut(s) 22, 189
SfaNI GCATC 1 cut(s) 403
SgrDI CGTCGACG 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 368, 374
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SnaBI TACGTA 1 cut(s) 574
Sse9I AATT 3 cut(s) 39, 83, 209
SsiI CCGC 2 cut(s) 153, 279
SspMI CTAG 2 cut(s) 144, 354
StyD4I CCNGG 2 cut(s) 20, 187
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 223, 466
TaiI ACGT 5 cut(s) 234, 255, 288, 294, 576
TaqI TCGA 6 cut(s) 213, 234, 246, 288, 303, 489
TasI AATT 3 cut(s) 39, 83, 209
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 2 cut(s) 396, 615
Tru9I TTAA 2 cut(s) 396, 615
TscAI CASTG 1 cut(s) 480
TseI GCWGC 2 cut(s) 149, 608
TspDTI ATGAA 3 cut(s) 76, 386, 459
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 3 cut(s) 235, 338, 373
XmiI GTMKAC 2 cut(s) 234, 288
XspI CTAG 2 cut(s) 144, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.