Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005856.1

Orthogroup ID

OG0003568

Physical Location & Seq

Genomic Coordinates Reverse (-)

18358 .. 19290

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005856.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggcgtctctcaccacctgctggttgcccaaaaccccaattccttctcctcaaatcccagcgaaatcccatcagtccccacaacttatgcttgtaaaacggtgccgtttaactcctcaaacaaggatctttctgggttccgccattagagcttcgaacgcaagcgctgccgccgagtcgtcgtcttcttcttcttcatcttctccgggactctactcggccaagcaattcgagctcacagttcccaacgtcgacttggtcctcgaggacgtccgcccctatctcatcgccgatggtggaaacgtcgacgttgtgtccgtcgaagacggcgtcgtttctctcaagctccaaggggcttgtggaagctgtcctagctcaacaaccaccatgaaaatggggatcgaacgagtgcttaaagaaaagtttggagatgcactcaaggatattcaacaagtctttgatgaagagaacagagagaccacagttgaggcagtgaatggtcatctcgacatattgaggccggcgatcaagaactttggtggaagtgttgaagtattatcagttgaaggtgaggattgccatgtaaaatatgtggggcctgactccattggatcaggaatcagagcagctattaaggagaagttcccagatattgtcaatgttgtgtttacaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

225

Amino Acids

23.99

Weight (kDa)

5.46

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01940
fragaria_vesca	FvH4_1g26790
malus_domestica	MD17G1279000.v1.1
prunus_persica	Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1
pyrus_communis	pycom09g19370 pycom17g27660
rosa_chinensis	RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041
rosa_laevigata	RLG00000023039
rosa_multiflora	Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395250
rosa_rugosa	Rorug03G0229200
rosa_samantha	Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300
rosa_wichuraiana	Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
AatII	GACGTC	1 cut(s)	273
AbsI	CCTCGAGG	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccI	GTMKAC	2 cut(s)	252, 306
AciI	CCGC	3 cut(s)	141, 171, 274
AclWI	GGATC	3 cut(s)	134, 407, 619
AcoI	YGGCCR	1 cut(s)	219
AcyI	GRCGYC	3 cut(s)	5, 270, 330
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	449, 551, 566
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	6 cut(s)	152, 235, 346, 366, 375, 629
AluI	AGCT	6 cut(s)	152, 235, 346, 366, 375, 629
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	12, 470
AlwI	GGATC	3 cut(s)	134, 407, 619
Ama87I	CYCGRG	1 cut(s)	263
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	219, 518, 596
ApeKI	GCWGC	2 cut(s)	167, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	259, 596
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	4, 581
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	177, 330
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	154, 638
BccI	CCATC	2 cut(s)	78, 287
BceAI	ACGGC	2 cut(s)	90, 343
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	12, 470
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	168, 171, 627
BlsI	GCNGC	3 cut(s)	169, 172, 628
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	259
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	259, 596
BmiI	GGNNCC	3 cut(s)	104, 139, 597
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	177, 330
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	326, 422
BpuMI	CCSGG	1 cut(s)	207
BsaHI	GRCGYC	3 cut(s)	5, 270, 330
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	39, 105
BseXI	GCAGC	2 cut(s)	154, 638
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	3 cut(s)	221, 520, 598
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	206, 521
BslFI	GGGAC	2 cut(s)	61, 222
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	12, 470
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	61, 222
BsnI	GGCC	3 cut(s)	221, 520, 598
Bso31I	GGTCTC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	126, 399, 525, 611
BspACI	CCGC	3 cut(s)	141, 171, 274
BspANI	GGCC	3 cut(s)	221, 520, 598
BspLI	GGNNCC	3 cut(s)	104, 139, 597
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	134, 407, 619
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	4 cut(s)	126, 399, 525, 611
BssNI	GRCGYC	3 cut(s)	5, 270, 330
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	102, 241, 484
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	3 cut(s)	5, 270, 330
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	163, 522
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	129, 402, 528, 614
BstMAI	GTCTC	2 cut(s)	12, 470
BstMBI	GATC	4 cut(s)	126, 399, 525, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 232, 372
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	154, 638
BstV2I	GAAGAC	2 cut(s)	177, 330
BstX2I	RGATCY	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	221, 520, 598
BtgZI	GCGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	163, 522
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	259, 596
CseI	GACGC	1 cut(s)	319
CviAII	CATG	2 cut(s)	388, 581
DpnI	GATC	4 cut(s)	128, 401, 527, 613
DpnII	GATC	4 cut(s)	126, 399, 525, 611
DriI	GACNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	2 cut(s)	130, 263
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	391, 584
FaiI	YATR	5 cut(s)	89, 389, 512, 582, 591
FaqI	GGGAC	2 cut(s)	61, 222
FatI	CATG	2 cut(s)	387, 580
FblI	GTMKAC	2 cut(s)	252, 306
Fnu4HI	GCNGC	3 cut(s)	168, 171, 627
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	168, 171, 627
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	168, 171, 627
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	221, 520, 598
HapII	CCGG	2 cut(s)	206, 521
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	3 cut(s)	5, 270, 330
Hin1II	CATG	2 cut(s)	391, 584
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	253, 307
HindII	GTYRAC	2 cut(s)	253, 307
HinfI	GANTC	4 cut(s)	176, 210, 602, 618
HpaII	CCGG	2 cut(s)	206, 521
HphI	GGTGA	2 cut(s)	4, 581
Hpy166II	GTNNAC	3 cut(s)	253, 307, 669
Hpy188I	TCNGA	1 cut(s)	623
Hpy188III	TCNNGA	3 cut(s)	506, 529, 615
Hpy8I	GTNNAC	3 cut(s)	253, 307, 669
Hpy99I	CGWCG	6 cut(s)	184, 254, 308, 311, 323, 335
HpyAV	CCTTC	2 cut(s)	54, 560
HpyCH4III	ACNGT	3 cut(s)	102, 241, 484
HpyCH4IV	ACGT	4 cut(s)	249, 270, 303, 309
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 232, 372
HpySE526I	ACGT	4 cut(s)	249, 270, 303, 309
Hsp92I	GRCGYC	3 cut(s)	5, 270, 330
Hsp92II	CATG	2 cut(s)	391, 584
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	520
KroNI	GCCGGC	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	126, 399, 525, 611
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	154, 638
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	4 cut(s)	249, 270, 303, 309
MalI	GATC	4 cut(s)	128, 401, 527, 613
MboI	GATC	4 cut(s)	126, 399, 525, 611
MboII	GAAGA	7 cut(s)	177, 180, 183, 186, 192, 335, 476
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	39, 227
MlyI	GAGTC	3 cut(s)	185, 204, 596
MnlI	CCTC	7 cut(s)	60, 126, 259, 272, 481, 510, 565
MroNI	GCCGGC	1 cut(s)	520
MseI	TTAA	3 cut(s)	110, 414, 633
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	2 cut(s)	206, 521
MspR9I	CCNGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 232, 372
NaeI	GCCGGC	1 cut(s)	522
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	126, 399, 525, 611
NgoMIV	GCCGGC	1 cut(s)	520
NlaIII	CATG	2 cut(s)	391, 584
NlaIV	GGNNCC	3 cut(s)	104, 139, 597
NmeAIII	GCCGAG	2 cut(s)	197, 199
NspV	TTCGAA	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 327
PdiI	GCCGGC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	618
PflFI	GACNNNGTC	2 cut(s)	257, 329
PflMI	CCANNNNNTGG	1 cut(s)	21
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	169, 172, 628
PleI	GAGTC	3 cut(s)	184, 204, 596
PpsI	GAGTC	3 cut(s)	184, 204, 596
Psp124BI	GAGCTC	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	104, 139, 597
PspPI	GGNCC	2 cut(s)	259, 596
PspXI	VCTCGAGB	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	126
PsyI	GACNNNGTC	2 cut(s)	257, 329
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	237
SalI	GTCGAC	2 cut(s)	251, 305
SaqAI	TTAA	3 cut(s)	110, 414, 633
SatI	GCNGC	3 cut(s)	168, 171, 627
Sau3AI	GATC	4 cut(s)	126, 399, 525, 611
Sau96I	GGNCC	2 cut(s)	259, 596
SchI	GAGTC	3 cut(s)	185, 204, 596
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	155
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	3 cut(s)	263, 341, 437
SmoI	CTYRAG	3 cut(s)	263, 341, 437
Sse9I	AATT	2 cut(s)	39, 227
SsiI	CCGC	3 cut(s)	141, 171, 274
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	102, 241, 484
TaiI	ACGT	4 cut(s)	252, 273, 306, 312
TaqI	TCGA	8 cut(s)	155, 231, 252, 264, 306, 321, 402, 507
TasI	AATT	2 cut(s)	39, 227
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	618
Tru1I	TTAA	3 cut(s)	110, 414, 633
Tru9I	TTAA	3 cut(s)	110, 414, 633
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	2 cut(s)	167, 626
TspDTI	ATGAA	3 cut(s)	186, 404, 477
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	2 cut(s)	257, 329
Van91I	CCANNNNNTGG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	3 cut(s)	253, 356, 391
XhoI	CTCGAG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	252, 306
XspI	CTAG	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.