Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001873.1

Orthogroup ID

OG0003568

Physical Location & Seq

Genomic Coordinates Forward (+)

24501 .. 25591

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001873.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggttccttctgatttctcctggttgcccaaaaccccaattccttcttctcaaatcccagcgaaatcccatcaatccccacaacttatgcttgtaaaacggtgccatctaactcctcaaagaagaatctttctatgttccgccattagagcttcgaacgcaagcgctgccgccgagtcttcttcttcttctccgggactctactcgaccaagcaatttgagctcatagttcccaacattgacttggttctcgaggacgtcgggccttatctcatcaacgatggtggaaacgtcgacgttgtgtccatcgaagacggcgtcgtttctctcaagctccaaggggcttgtggaagctgtcctagctcaataaccaccatgaaaatggggattgaacgagtgcttaaagaaaagtttggagatgcactcaaggatattcaacaagtctttgatgaagaaaacagagagaccacaattgagatttcagaagcctactggagcaattccttcttcaatgctgggattggagtctctgacaagagacttatttcagtcctgaaaattacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

5.43

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01940
fragaria_vesca	FvH4_1g26790
malus_domestica	MD17G1279000.v1.1
prunus_persica	Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1
pyrus_communis	pycom09g19370 pycom17g27660
rosa_chinensis	RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041
rosa_laevigata	RLG00000023039
rosa_multiflora	Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395250
rosa_rugosa	Rorug03G0229200
rosa_samantha	Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300
rosa_wichuraiana	Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	141, 171
AcyI	GRCGYC	2 cut(s)	258, 318
AfeI	AGCGCT	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	392, 437, 511
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	5 cut(s)	152, 223, 334, 354, 363
AluI	AGCT	5 cut(s)	152, 223, 334, 354, 363
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	458, 532, 532
Ama87I	CYCGRG	1 cut(s)	251
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	195
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	171, 318
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	4 cut(s)	78, 114, 275, 314
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	3 cut(s)	458, 532, 532
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
Bme1390I	CCNGG	2 cut(s)	22, 195
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	6, 104
BmrFI	CCNGG	2 cut(s)	22, 195
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	171, 318
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpmI	CTGGAG	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	314, 410
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	258, 318
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	2 cut(s)	58, 515
BshFI	GGCC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	458, 532, 532
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	141, 171
BspANI	GGCC	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	6, 104
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	337
BssNI	GRCGYC	2 cut(s)	258, 318
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	2 cut(s)	258, 318
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstMAI	GTCTC	3 cut(s)	458, 532, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	20, 193
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	171, 318
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	2 cut(s)	376, 564
CviJI	RGCY	8 cut(s)	152, 223, 265, 334, 344, 354, 363, 488
CviKI_1	RGCY	8 cut(s)	152, 223, 265, 334, 344, 354, 363, 488
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	458
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	379, 567
FaiI	YATR	5 cut(s)	89, 136, 227, 377, 565
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	375, 563
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	168, 171
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	168, 171
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	168, 171
GsaI	CCCAGC	2 cut(s)	62, 519
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	258, 318
Hin1II	CATG	2 cut(s)	379, 567
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	126, 176, 198, 525
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	13, 484, 532
Hpy188III	TCNNGA	2 cut(s)	251, 553
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	4 cut(s)	263, 296, 299, 323
HpyAV	CCTTC	3 cut(s)	18, 54, 514
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	3 cut(s)	258, 291, 297
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
HpySE526I	ACGT	3 cut(s)	258, 291, 297
Hsp92I	GRCGYC	2 cut(s)	258, 318
Hsp92II	CATG	2 cut(s)	379, 567
HspAI	GCGC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	339, 495
LpnPI	CCDG	6 cut(s)	7, 34, 72, 207, 478, 501
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	3 cut(s)	258, 291, 297
MboII	GAAGA	9 cut(s)	39, 135, 171, 174, 177, 180, 323, 464, 499
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	5 cut(s)	39, 215, 471, 499, 558
MlyI	GAGTC	3 cut(s)	185, 192, 534
MnlI	CCTC	2 cut(s)	126, 247
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	22, 195
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	2 cut(s)	379, 567
NlaIV	GGNNCC	2 cut(s)	6, 104
NmeAIII	GCCGAG	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	169, 172
PleI	GAGTC	3 cut(s)	184, 192, 533
PpsI	GAGTC	3 cut(s)	184, 192, 533
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	20
PspFI	CCCAGC	2 cut(s)	58, 515
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	6, 104
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	168, 171
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	185, 192, 534
ScrFI	CCNGG	2 cut(s)	22, 195
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	154, 225, 261, 294, 300, 336, 356, 365
SfaNI	GCATC	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	155
SgrDI	CGTCGACG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	251, 329, 425
SmoI	CTYRAG	3 cut(s)	251, 329, 425
Sse9I	AATT	5 cut(s)	39, 215, 471, 499, 558
SsiI	CCGC	2 cut(s)	141, 171
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	20, 193
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	3 cut(s)	261, 294, 300
TaqI	TCGA	5 cut(s)	155, 206, 252, 294, 309
TasI	AATT	5 cut(s)	39, 215, 471, 499, 558
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	392, 465
Tth111I	GACNNNGTC	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	3 cut(s)	241, 344, 379
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	360
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.