Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418247.1

Orthogroup ID

OG0003568

Physical Location & Seq

Genomic Coordinates Forward (+)

591 .. 1292

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418247.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggttccttctgatttctactggttgcccaaaaccccaattccttcttctcaaatcccagcgaaatcccatcaatccccacaacttatgcttgtaaaatggtgccgtctaactcctcaaagaagaatctttctctgttccgccattagagcttcgaacgcaagcgttgccgccgagtcttcttcttcttctctaggactctacttggccaagcaatttgagctcatagttcccaacattgacttggttctcaaggacgtcggcccctatctcatcaacgatggtggaaacgtcgacattgtgtccgtcaaagacggcgtcatttctctcaagctccaaggggcttgtggaagctttcctagctcaacaaccaccatgaaaatggggattgaacgagtgcttaaagaaaagtttggggatgcactcaaggatattcaacaagtctttgatgaagaaaacagagagaccacagttgaggtgagaggttttgatttctcgacatgcttatacagtgtcgatggatttcgtgaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

5.52

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01940
fragaria_vesca	FvH4_1g26790
malus_domestica	MD17G1279000.v1.1
prunus_persica	Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1
pyrus_communis	pycom09g19370 pycom17g27660
rosa_chinensis	RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041
rosa_laevigata	RLG00000023039
rosa_multiflora	Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395250
rosa_rugosa	Rorug03G0229200
rosa_samantha	Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300
rosa_wichuraiana	Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	141, 171
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	2 cut(s)	258, 318
AgsI	TTSAA	2 cut(s)	392, 437
AhdI	GACNNNNNGTC	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	5 cut(s)	152, 223, 334, 354, 363
AluI	AGCT	5 cut(s)	152, 223, 334, 354, 363
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	2 cut(s)	207, 262
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	490
AsuII	TTCGAA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	3 cut(s)	78, 275, 512
BceAI	ACGGC	2 cut(s)	90, 331
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	194, 360
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	6, 104, 265
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	3 cut(s)	236, 314, 410
BsaHI	GRCGYC	2 cut(s)	258, 318
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	105
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	209, 264
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	209, 264
Bso31I	GGTCTC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	141, 171
BspANI	GGCC	2 cut(s)	209, 264
BspLI	GGNNCC	3 cut(s)	6, 104, 265
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	337
BssNI	GRCGYC	2 cut(s)	258, 318
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	472, 512
BstACI	GRCGYC	2 cut(s)	258, 318
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
BstNSI	RCATGY	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	209, 264
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	2 cut(s)	376, 501
CviJI	RGCY	8 cut(s)	152, 209, 223, 264, 334, 344, 354, 363
CviKI_1	RGCY	8 cut(s)	152, 209, 223, 264, 334, 344, 354, 363
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	379, 504
FaiI	YATR	5 cut(s)	89, 227, 377, 502, 508
FatI	CATG	2 cut(s)	375, 500
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	194, 360
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	209, 264
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	2 cut(s)	258, 318
Hin1II	CATG	2 cut(s)	379, 504
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	3 cut(s)	126, 176, 198
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	496, 527
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	263, 296
HpyAV	CCTTC	2 cut(s)	18, 54
HpyCH4III	ACNGT	2 cut(s)	472, 512
HpyCH4IV	ACGT	2 cut(s)	258, 291
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
HpySE526I	ACGT	2 cut(s)	258, 291
Hsp92I	GRCGYC	2 cut(s)	258, 318
Hsp92II	CATG	2 cut(s)	379, 504
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	2 cut(s)	7, 72
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	194, 360
MaeII	ACGT	2 cut(s)	258, 291
MboII	GAAGA	7 cut(s)	39, 135, 171, 174, 177, 180, 464
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	39, 215
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	185, 192
MnlI	CCTC	4 cut(s)	126, 469, 476, 523
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	209
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 167, 220, 360
NlaIII	CATG	2 cut(s)	379, 504
NlaIV	GGNNCC	3 cut(s)	6, 104, 265
NmeAIII	GCCGAG	1 cut(s)	199
NspI	RCATGY	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	184, 192
PpsI	GAGTC	2 cut(s)	184, 192
Psp124BI	GAGCTC	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	6, 104, 265
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	185, 192
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	9 cut(s)	154, 225, 261, 294, 336, 356, 365, 480, 487
SfaNI	GCATC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	251, 329, 425
SmoI	CTYRAG	3 cut(s)	251, 329, 425
Sse9I	AATT	2 cut(s)	39, 215
SsiI	CCGC	2 cut(s)	141, 171
SspMI	CTAG	2 cut(s)	194, 360
SstI	GAGCTC	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	472, 512
TaiI	ACGT	2 cut(s)	261, 294
TaqI	TCGA	4 cut(s)	155, 294, 497, 516
TasI	AATT	2 cut(s)	39, 215
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	392, 465
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	517
Tth111I	GACNNNGTC	1 cut(s)	317
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	3 cut(s)	241, 344, 379
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	194, 360
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.