NifU-like protein 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01940 |
| fragaria_vesca | FvH4_1g26790 |
| malus_domestica | MD17G1279000.v1.1 |
| prunus_persica | Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 |
| pyrus_communis | pycom09g19370 pycom17g27660 |
| rosa_chinensis | RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041 |
| rosa_laevigata | RLG00000023039 |
| rosa_multiflora | Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00395250 |
| rosa_rugosa | Rorug03G0229200 |
| rosa_samantha | Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300 |
| rosa_wichuraiana | Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2997 |
| Acc65I | GGTACC | 2 cut(s) | 397, 1037 |
| AccB1I | GGYRCC | 2 cut(s) | 397, 1037 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 470 |
| AccBSI | CCGCTC | 1 cut(s) | 2253 |
| AccI | GTMKAC | 1 cut(s) | 1387 |
| AccII | CGCG | 2 cut(s) | 3038, 3040 |
| AciI | CCGC | 5 cut(s) | 52, 2253, 2267, 3313, 3495 |
| AclWI | GGATC | 8 cut(s) | 157, 481, 889, 1603, 1788, 2058, 2326, 2339 |
| AcoI | YGGCCR | 4 cut(s) | 246, 1844, 1973, 2254 |
| AcsI | RAATTY | 8 cut(s) | 73, 818, 1078, 1461, 1802, 1953, 2259, 3082 |
| AcuI | CTGAAG | 4 cut(s) | 956, 1307, 3341, 3446 |
| AcvI | CACGTG | 1 cut(s) | 3131 |
| AcyI | GRCGYC | 1 cut(s) | 2994 |
| AfaI | GTAC | 5 cut(s) | 399, 839, 1039, 1903, 2732 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 77, 470, 965, 1262, 1318, 2605, 2708 |
| AflIII | ACRYGT | 3 cut(s) | 2149, 2501, 3130 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3566 |
| AjnI | CCWGG | 5 cut(s) | 248, 393, 1168, 1841, 1897 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 374, 406, 2601, 2633 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3324, 3356 |
| Alw21I | GWGCWC | 1 cut(s) | 3130 |
| Alw26I | GTCTC | 9 cut(s) | 353, 753, 835, 1823, 2311, 2776, 3001, 3086, 3225 |
| Alw44I | GTGCAC | 1 cut(s) | 3126 |
| AlwI | GGATC | 8 cut(s) | 157, 481, 889, 1603, 1788, 2058, 2326, 2339 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1075, 3067 |
| Ama87I | CYCGRG | 1 cut(s) | 1826 |
| ApaLI | GTGCAC | 1 cut(s) | 3126 |
| ApeKI | GCWGC | 3 cut(s) | 769, 2269, 3195 |
| ApoI | RAATTY | 8 cut(s) | 73, 818, 1078, 1461, 1802, 1953, 2259, 3082 |
| AseI | ATTAAT | 2 cut(s) | 429, 666 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 988, 1103, 3063, 3561 |
| Asp718I | GGTACC | 2 cut(s) | 397, 1037 |
| AspLEI | GCGC | 2 cut(s) | 3040, 3415 |
| AspS9I | GGNCC | 9 cut(s) | 160, 227, 627, 1147, 1811, 2131, 2681, 3315, 3458 |
| AsuC2I | CCSGG | 1 cut(s) | 499 |
| AsuHPI | GGTGA | 3 cut(s) | 1415, 1901, 2873 |
| AvaI | CYCGRG | 1 cut(s) | 1826 |
| AvaII | GGWCC | 5 cut(s) | 627, 1147, 1811, 2681, 3458 |
| BaeGI | GKGCMC | 1 cut(s) | 3130 |
| BalI | TGGCCA | 2 cut(s) | 248, 1975 |
| BamHI | GGATCC | 1 cut(s) | 2331 |
| BanI | GGYRCC | 2 cut(s) | 397, 1037 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 870, 902, 1242, 1274 |
| BbrPI | CACGTG | 1 cut(s) | 3131 |
| BbsI | GAAGAC | 1 cut(s) | 1947 |
| Bbv12I | GWGCWC | 1 cut(s) | 3130 |
| BbvCI | CCTCAGC | 3 cut(s) | 144, 2601, 2850 |
| BbvI | GCAGC | 3 cut(s) | 756, 2281, 3207 |
| BccI | CCATC | 9 cut(s) | 1924, 2041, 2200, 2541, 2798, 2852, 3243, 3327, 3469 |
| BceAI | ACGGC | 1 cut(s) | 2504 |
| BciT130I | CCWGG | 5 cut(s) | 250, 395, 1170, 1843, 1899 |
| BclI | TGATCA | 1 cut(s) | 1206 |
| BcnI | CCSGG | 1 cut(s) | 499 |
| BcoDI | GTCTC | 9 cut(s) | 353, 753, 835, 1823, 2311, 2776, 3001, 3086, 3225 |
| BfaI | CTAG | 8 cut(s) | 488, 657, 1247, 1383, 1640, 1685, 3327, 3350 |
| BfmI | CTRYAG | 2 cut(s) | 407, 770 |
| BglII | AGATCT | 1 cut(s) | 1995 |
| BisI | GCNGC | 5 cut(s) | 770, 2254, 2270, 3196, 3314 |
| BlsI | GCNGC | 5 cut(s) | 771, 2255, 2271, 3197, 3315 |
| Bme1390I | CCNGG | 6 cut(s) | 250, 395, 499, 1170, 1843, 1899 |
| Bme18I | GGWCC | 5 cut(s) | 627, 1147, 1811, 2681, 3458 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3566 |
| BmeT110I | CYCGRG | 1 cut(s) | 1826 |
| BmgT120I | GGNCC | 9 cut(s) | 160, 227, 627, 1147, 1811, 2131, 2681, 3315, 3458 |
| BmiI | GGNNCC | 8 cut(s) | 161, 399, 448, 628, 1039, 1528, 2333, 3317 |
| BmrFI | CCNGG | 6 cut(s) | 250, 395, 499, 1170, 1843, 1899 |
| BmrI | ACTGGG | 1 cut(s) | 166 |
| BmuI | ACTGGG | 1 cut(s) | 166 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3456 |
| BpiI | GAAGAC | 1 cut(s) | 1947 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1289, 1321 |
| BpmI | CTGGAG | 2 cut(s) | 285, 2475 |
| Bpu10I | CCTNAGC | 4 cut(s) | 144, 2249, 2601, 2850 |
| BpuEI | CTTGAG | 9 cut(s) | 83, 364, 719, 967, 1316, 1974, 2422, 2985, 3000 |
| BpuMI | CCSGG | 1 cut(s) | 499 |
| BsaAI | YACGTR | 1 cut(s) | 3131 |
| BsaBI | GATNNNNATC | 1 cut(s) | 216 |
| BsaHI | GRCGYC | 1 cut(s) | 2994 |
| BsaI | GGTCTC | 2 cut(s) | 1823, 3225 |
| BsaJI | CCNNGG | 6 cut(s) | 630, 730, 1419, 1717, 2121, 2677 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2004, 2034, 2229, 2259 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 77, 470, 965, 1262, 1318, 2605, 2708 |
| Bse1I | ACTGG | 7 cut(s) | 161, 302, 609, 1597, 1982, 2166, 3460 |
| Bse3DI | GCAATG | 2 cut(s) | 1932, 3308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 216 |
| BseBI | CCWGG | 5 cut(s) | 250, 395, 1170, 1843, 1899 |
| BseDI | CCNNGG | 6 cut(s) | 630, 730, 1419, 1717, 2121, 2677 |
| BseGI | GGATG | 7 cut(s) | 641, 1826, 2195, 2580, 2836, 2860, 3394 |
| BseJI | GATNNNNATC | 1 cut(s) | 216 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 77, 470, 965, 1262, 1318, 2605, 2708 |
| BseMI | GCAATG | 2 cut(s) | 1932, 3308 |
| BseNI | ACTGG | 7 cut(s) | 161, 302, 609, 1597, 1982, 2166, 3460 |
| BseRI | GAGGAG | 4 cut(s) | 1591, 2394, 3412, 3415 |
| BseSI | GKGCMC | 1 cut(s) | 3130 |
| BseXI | GCAGC | 3 cut(s) | 756, 2281, 3207 |
| BsgI | GTGCAG | 1 cut(s) | 1037 |
| Bsh1236I | CGCG | 2 cut(s) | 3038, 3040 |
| BshNI | GGYRCC | 2 cut(s) | 397, 1037 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1826 |
| BsiSI | CCGG | 2 cut(s) | 498, 524 |
| BslFI | GGGAC | 6 cut(s) | 514, 695, 1335, 1809, 3418, 3487 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 77, 470, 965, 1262, 1318, 2605, 2708 |
| BsmAI | GTCTC | 9 cut(s) | 353, 753, 835, 1823, 2311, 2776, 3001, 3086, 3225 |
| BsmBI | CGTCTC | 2 cut(s) | 3001, 3086 |
| BsmFI | GGGAC | 6 cut(s) | 514, 695, 1335, 1809, 3418, 3487 |
| Bso31I | GGTCTC | 2 cut(s) | 1823, 3225 |
| BsoBI | CYCGRG | 1 cut(s) | 1826 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3130 |
| BspACI | CCGC | 5 cut(s) | 52, 2253, 2267, 3313, 3495 |
| BspFNI | CGCG | 2 cut(s) | 3038, 3040 |
| BspHI | TCATGA | 2 cut(s) | 235, 3593 |
| BspLI | GGNNCC | 8 cut(s) | 161, 399, 448, 628, 1039, 1528, 2333, 3317 |
| BspMAI | CTGCAG | 1 cut(s) | 774 |
| BspPI | GGATC | 8 cut(s) | 157, 481, 889, 1603, 1788, 2058, 2326, 2339 |
| BspT107I | GGYRCC | 2 cut(s) | 397, 1037 |
| BspTNI | GGTCTC | 2 cut(s) | 1823, 3225 |
| BsrBI | CCGCTC | 1 cut(s) | 2253 |
| BsrDI | GCAATG | 2 cut(s) | 1932, 3308 |
| BsrI | ACTGG | 7 cut(s) | 161, 302, 609, 1597, 1982, 2166, 3460 |
| BssECI | CCNNGG | 6 cut(s) | 630, 730, 1419, 1717, 2121, 2677 |
| BssNAI | GTATAC | 1 cut(s) | 1388 |
| BssNI | GRCGYC | 1 cut(s) | 2994 |
| BssT1I | CCWWGG | 4 cut(s) | 630, 1717, 2121, 2677 |
| Bst1107I | GTATAC | 1 cut(s) | 1388 |
| Bst2UI | CCWGG | 5 cut(s) | 250, 395, 1170, 1843, 1899 |
| Bst4CI | ACNGT | 4 cut(s) | 411, 1880, 1946, 2685 |
| Bst6I | CTCTTC | 3 cut(s) | 838, 3084, 3544 |
| BstACI | GRCGYC | 1 cut(s) | 2994 |
| BstBAI | YACGTR | 1 cut(s) | 3131 |
| BstC8I | GCNNGC | 5 cut(s) | 767, 1923, 2274, 2763, 3417 |
| BstDSI | CCRYGG | 2 cut(s) | 730, 1419 |
| BstF5I | GGATG | 7 cut(s) | 641, 1826, 2195, 2580, 2836, 2860, 3394 |
| BstFNI | CGCG | 2 cut(s) | 3038, 3040 |
| BstHHI | GCGC | 2 cut(s) | 3040, 3415 |
| BstMAI | GTCTC | 9 cut(s) | 353, 753, 835, 1823, 2311, 2776, 3001, 3086, 3225 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2798, 2984 |
| BstNI | CCWGG | 5 cut(s) | 250, 395, 1170, 1843, 1899 |
| BstNSI | RCATGY | 3 cut(s) | 2153, 2505, 2639 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3456 |
| BstSCI | CCNGG | 6 cut(s) | 248, 393, 497, 1168, 1841, 1897 |
| BstSFI | CTRYAG | 2 cut(s) | 407, 770 |
| BstSLI | GKGCMC | 1 cut(s) | 3130 |
| BstUI | CGCG | 2 cut(s) | 3038, 3040 |
| BstV1I | GCAGC | 3 cut(s) | 756, 2281, 3207 |
| BstV2I | GAAGAC | 1 cut(s) | 1947 |
| BstX2I | RGATCY | 6 cut(s) | 149, 473, 1595, 1995, 2050, 2331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2128 |
| BstYI | RGATCY | 6 cut(s) | 149, 473, 1595, 1995, 2050, 2331 |
| BstZ17I | GTATAC | 1 cut(s) | 1388 |
| BtgI | CCRYGG | 2 cut(s) | 730, 1419 |
| BtgZI | GCGATG | 1 cut(s) | 1494 |
| BtsCI | GGATG | 7 cut(s) | 641, 1826, 2195, 2580, 2836, 2860, 3394 |
| BtsI | GCAGTG | 1 cut(s) | 1049 |
| BtsIMutI | CAGTG | 5 cut(s) | 154, 602, 1049, 2488, 3453 |
| Cac8I | GCNNGC | 5 cut(s) | 767, 1923, 2274, 2763, 3417 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1075, 3067 |
| CciI | TCATGA | 2 cut(s) | 235, 3593 |
| CfoI | GCGC | 2 cut(s) | 3040, 3415 |
| Cfr13I | GGNCC | 9 cut(s) | 160, 227, 627, 1147, 1811, 2131, 2681, 3315, 3458 |
| CseI | GACGC | 1 cut(s) | 3103 |
| CsiI | ACCWGGT | 1 cut(s) | 1897 |
| Csp6I | GTAC | 5 cut(s) | 398, 838, 1038, 1902, 2731 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 6, 41, 931, 966, 3236, 3271 |
| CviQI | GTAC | 5 cut(s) | 398, 838, 1038, 1902, 2731 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3566 |
| EaeI | YGGCCR | 4 cut(s) | 246, 1844, 1973, 2254 |
| Eam1104I | CTCTTC | 3 cut(s) | 838, 3084, 3544 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3566 |
| EarI | CTCTTC | 3 cut(s) | 838, 3084, 3544 |
| Eco130I | CCWWGG | 4 cut(s) | 630, 1717, 2121, 2677 |
| Eco31I | GGTCTC | 2 cut(s) | 1823, 3225 |
| Eco47I | GGWCC | 5 cut(s) | 627, 1147, 1811, 2681, 3458 |
| Eco57I | CTGAAG | 4 cut(s) | 956, 1307, 3341, 3446 |
| Eco72I | CACGTG | 1 cut(s) | 3131 |
| Eco88I | CYCGRG | 1 cut(s) | 1826 |
| EcoO109I | RGGNCCY | 2 cut(s) | 227, 627 |
| EcoRII | CCWGG | 5 cut(s) | 248, 393, 1168, 1841, 1897 |
| EcoT14I | CCWWGG | 4 cut(s) | 630, 1717, 2121, 2677 |
| ErhI | CCWWGG | 4 cut(s) | 630, 1717, 2121, 2677 |
| Esp3I | CGTCTC | 2 cut(s) | 3001, 3086 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2781, 2813, 2880, 2912, 3171, 3203 |
| FaqI | GGGAC | 6 cut(s) | 514, 695, 1335, 1809, 3418, 3487 |
| FauNDI | CATATG | 1 cut(s) | 2958 |
| FbaI | TGATCA | 1 cut(s) | 1206 |
| FblI | GTMKAC | 1 cut(s) | 1387 |
| Fnu4HI | GCNGC | 5 cut(s) | 770, 2254, 2270, 3196, 3314 |
| FokI | GGATG | 7 cut(s) | 628, 1833, 2182, 2567, 2843, 2867, 3401 |
| Fsp4HI | GCNGC | 5 cut(s) | 770, 2254, 2270, 3196, 3314 |
| FspBI | CTAG | 8 cut(s) | 488, 657, 1247, 1383, 1640, 1685, 3327, 3350 |
| GlaI | GCGC | 2 cut(s) | 3039, 3414 |
| GluI | GCNGC | 5 cut(s) | 770, 2254, 2270, 3196, 3314 |
| GsuI | CTGGAG | 2 cut(s) | 285, 2475 |
| HapII | CCGG | 2 cut(s) | 498, 524 |
| HgaI | GACGC | 1 cut(s) | 3103 |
| HhaI | GCGC | 2 cut(s) | 3040, 3415 |
| Hin1I | GRCGYC | 1 cut(s) | 2994 |
| Hin6I | GCGC | 2 cut(s) | 3038, 3413 |
| HinP1I | GCGC | 2 cut(s) | 3038, 3413 |
| HincII | GTYRAC | 2 cut(s) | 418, 3580 |
| HindII | GTYRAC | 2 cut(s) | 418, 3580 |
| HindIII | AAGCTT | 3 cut(s) | 695, 1850, 2790 |
| HpaII | CCGG | 2 cut(s) | 498, 524 |
| HphI | GGTGA | 3 cut(s) | 1415, 1901, 2873 |
| Hpy166II | GTNNAC | 7 cut(s) | 418, 1388, 2641, 3128, 3343, 3374, 3580 |
| Hpy8I | GTNNAC | 7 cut(s) | 418, 1388, 2641, 3128, 3343, 3374, 3580 |
| Hpy99I | CGWCG | 3 cut(s) | 2425, 2525, 3372 |
| HpyAV | CCTTC | 7 cut(s) | 872, 980, 1018, 1613, 2322, 2625, 3421 |
| HpyCH4III | ACNGT | 4 cut(s) | 411, 1880, 1946, 2685 |
| HpyCH4IV | ACGT | 5 cut(s) | 269, 2423, 2994, 3130, 3370 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2798, 2984 |
| HpySE526I | ACGT | 5 cut(s) | 269, 2423, 2994, 3130, 3370 |
| Hsp92I | GRCGYC | 1 cut(s) | 2994 |
| HspAI | GCGC | 2 cut(s) | 3038, 3413 |
| KpnI | GGTACC | 2 cut(s) | 401, 1041 |
| Ksp22I | TGATCA | 1 cut(s) | 1206 |
| LmnI | GCTCC | 6 cut(s) | 304, 371, 587, 1195, 1258, 3164 |
| Lsp1109I | GCAGC | 3 cut(s) | 756, 2281, 3207 |
| MabI | ACCWGGT | 1 cut(s) | 1897 |
| MaeI | CTAG | 8 cut(s) | 488, 657, 1247, 1383, 1640, 1685, 3327, 3350 |
| MaeII | ACGT | 5 cut(s) | 269, 2423, 2994, 3130, 3370 |
| MbiI | CCGCTC | 1 cut(s) | 2253 |
| MfeI | CAATTG | 3 cut(s) | 620, 1690, 3168 |
| MflI | RGATCY | 6 cut(s) | 149, 473, 1595, 1995, 2050, 2331 |
| MhlI | GDGCHC | 1 cut(s) | 3130 |
| MlsI | TGGCCA | 2 cut(s) | 248, 1975 |
| MluNI | TGGCCA | 2 cut(s) | 248, 1975 |
| MlyI | GAGTC | 6 cut(s) | 355, 525, 986, 2231, 3007, 3440 |
| MmeI | TCCRAC | 4 cut(s) | 669, 1821, 2444, 3426 |
| Mox20I | TGGCCA | 2 cut(s) | 248, 1975 |
| MroXI | GAANNNNTTC | 4 cut(s) | 988, 1103, 3063, 3561 |
| MscI | TGGCCA | 2 cut(s) | 248, 1975 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1965 |
| Msp20I | TGGCCA | 2 cut(s) | 248, 1975 |
| MspA1I | CMGCKG | 3 cut(s) | 143, 2605, 3539 |
| MspI | CCGG | 2 cut(s) | 498, 524 |
| MspR9I | CCNGG | 6 cut(s) | 250, 395, 499, 1170, 1843, 1899 |
| MunI | CAATTG | 3 cut(s) | 620, 1690, 3168 |
| MvaI | CCWGG | 5 cut(s) | 250, 395, 1170, 1843, 1899 |
| MvnI | CGCG | 2 cut(s) | 3038, 3040 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2798, 2984 |
| NciI | CCSGG | 1 cut(s) | 499 |
| NdeI | CATATG | 1 cut(s) | 2958 |
| NlaIV | GGNNCC | 8 cut(s) | 161, 399, 448, 628, 1039, 1528, 2333, 3317 |
| NmuCI | GTSAC | 2 cut(s) | 600, 2526 |
| NspI | RCATGY | 3 cut(s) | 2153, 2505, 2639 |
| PagI | TCATGA | 2 cut(s) | 235, 3593 |
| PciI | ACATGT | 2 cut(s) | 2149, 2501 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2420 |
| PdmI | GAANNNNTTC | 4 cut(s) | 988, 1103, 3063, 3561 |
| PfeI | GAWTC | 9 cut(s) | 239, 482, 527, 1165, 1315, 1722, 2416, 3064, 3440 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 470 |
| PfoI | TCCNGGA | 1 cut(s) | 497 |
| PkrI | GCNGC | 5 cut(s) | 771, 2255, 2271, 3197, 3315 |
| PleI | GAGTC | 6 cut(s) | 354, 524, 985, 2230, 3007, 3439 |
| PmaCI | CACGTG | 1 cut(s) | 3131 |
| PmlI | CACGTG | 1 cut(s) | 3131 |
| PpsI | GAGTC | 6 cut(s) | 354, 524, 985, 2230, 3007, 3439 |
| Ppu21I | YACGTR | 1 cut(s) | 3131 |
| PpuMI | RGGWCCY | 1 cut(s) | 627 |
| PscI | ACATGT | 2 cut(s) | 2149, 2501 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3456 |
| PshBI | ATTAAT | 2 cut(s) | 429, 666 |
| Psp5II | RGGWCCY | 1 cut(s) | 627 |
| Psp6I | CCWGG | 5 cut(s) | 248, 393, 1168, 1841, 1897 |
| PspCI | CACGTG | 1 cut(s) | 3131 |
| PspGI | CCWGG | 5 cut(s) | 248, 393, 1168, 1841, 1897 |
| PspN4I | GGNNCC | 8 cut(s) | 161, 399, 448, 628, 1039, 1528, 2333, 3317 |
| PspPI | GGNCC | 9 cut(s) | 160, 227, 627, 1147, 1811, 2131, 2681, 3315, 3458 |
| PspPPI | RGGWCCY | 1 cut(s) | 627 |
| PstI | CTGCAG | 1 cut(s) | 774 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1075, 3067 |
| PsuI | RGATCY | 6 cut(s) | 149, 473, 1595, 1995, 2050, 2331 |
| PvuII | CAGCTG | 3 cut(s) | 143, 2605, 3539 |
| RsaI | GTAC | 5 cut(s) | 399, 839, 1039, 1903, 2732 |
| RsaNI | GTAC | 5 cut(s) | 398, 838, 1038, 1902, 2731 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1965 |
| SatI | GCNGC | 5 cut(s) | 770, 2254, 2270, 3196, 3314 |
| Sau96I | GGNCC | 9 cut(s) | 160, 227, 627, 1147, 1811, 2131, 2681, 3315, 3458 |
| SchI | GAGTC | 6 cut(s) | 355, 525, 986, 2231, 3007, 3440 |
| ScrFI | CCNGG | 6 cut(s) | 250, 395, 499, 1170, 1843, 1899 |
| SduI | GDGCHC | 1 cut(s) | 3130 |
| SexAI | ACCWGGT | 1 cut(s) | 1897 |
| SfcI | CTRYAG | 2 cut(s) | 407, 770 |
| SinI | GGWCC | 5 cut(s) | 627, 1147, 1811, 2681, 3458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1965 |
| SmlI | CTYRAG | 9 cut(s) | 62, 343, 698, 946, 1295, 1989, 2437, 3000, 3015 |
| SmoI | CTYRAG | 9 cut(s) | 62, 343, 698, 946, 1295, 1989, 2437, 3000, 3015 |
| SsiI | CCGC | 5 cut(s) | 52, 2253, 2267, 3313, 3495 |
| SspI | AATATT | 1 cut(s) | 276 |
| SspMI | CTAG | 8 cut(s) | 488, 657, 1247, 1383, 1640, 1685, 3327, 3350 |
| StyD4I | CCNGG | 6 cut(s) | 248, 393, 497, 1168, 1841, 1897 |
| StyI | CCWWGG | 4 cut(s) | 630, 1717, 2121, 2677 |
| TaaI | ACNGT | 4 cut(s) | 411, 1880, 1946, 2685 |
| TaiI | ACGT | 5 cut(s) | 272, 2426, 2997, 3133, 3373 |
| TaqI | TCGA | 8 cut(s) | 480, 980, 2041, 2081, 2354, 2376, 2414, 3112 |
| TatI | WGTACW | 1 cut(s) | 2730 |
| TauI | GCSGC | 2 cut(s) | 2256, 3316 |
| TfiI | GAWTC | 9 cut(s) | 239, 482, 527, 1165, 1315, 1722, 2416, 3064, 3440 |
| TscAI | CASTG | 5 cut(s) | 161, 609, 1056, 2488, 3460 |
| TseFI | GTSAC | 2 cut(s) | 600, 2526 |
| TseI | GCWGC | 3 cut(s) | 769, 2269, 3195 |
| Tsp45I | GTSAC | 2 cut(s) | 600, 2526 |
| TspGWI | ACGGA | 3 cut(s) | 403, 2124, 3597 |
| TspRI | CASTG | 5 cut(s) | 161, 609, 1056, 2488, 3460 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 470 |
| VneI | GTGCAC | 1 cut(s) | 3126 |
| VpaK11BI | GGWCC | 5 cut(s) | 627, 1147, 1811, 2681, 3458 |
| VspI | ATTAAT | 2 cut(s) | 429, 666 |
| XapI | RAATTY | 8 cut(s) | 73, 818, 1078, 1461, 1802, 1953, 2259, 3082 |
| XbaI | TCTAGA | 2 cut(s) | 1246, 3349 |
| XceI | RCATGY | 3 cut(s) | 2153, 2505, 2639 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 274 |
| XmiI | GTMKAC | 1 cut(s) | 1387 |
| XmnI | GAANNNNTTC | 4 cut(s) | 988, 1103, 3063, 3561 |
| XspI | CTAG | 8 cut(s) | 488, 657, 1247, 1383, 1640, 1685, 3327, 3350 |
| ZraI | GACGTC | 1 cut(s) | 2995 |