Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003568

Physical Location & Seq

Genomic Coordinates Reverse (-)

419618 .. 421201

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGTCTCTCACAGCCACCGGGTTGCCCAAAACCCCAACGCCATTTTCAAAAATTCCAGCCACGTCCCACCAATACCCACAATCTGTATTTGTACAACGGCACCGGTTAACCTCTCAAGGATCGATCTTTGTGAAAAGCGCCATTAGAGCTTCGAACCCGAGCGCAGCCGCTGAGTCTTCTTCACCTGGACTCTACTCCGCCAAGAAGTACGAGCTCACCGTTCCTAACGTCGACTTGGTTCTTGAGGACGTCCGCCCCTATCTCATCGCTGATGGCGGTAACGTCGACGTTGTGTCCGTTGAGGACGGCGTCGTTTCACTCAAGCTCCAAGGGGCTTGTGGGAGCTGCCCTAGCTCAACCACCACCATGAAAATGGGAATTGAAAGAGTGCTTAAAGAAAAGTTTGGAGATGCGCTCAAGGATATTCAACAAGTCTATGATGAAGAAAACAAAGAGACCACTGTTGAGGCAGTGAATGGCCATCTTGACATATTGAGACCAGCCATAAAGAACTTTGGAGGAAGTGTGGAAGTGTTATCTGTTGAAGGTGGGGATTGCCATGTAAACTATGTGGGGCCTGACTCCATTGGATCAGGAATCAAAGCAGCCATTAAGGAGAAGTTCCCAGATATTGTCAATGTTGTGTTCACTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

220

Amino Acids

23.26

Weight (kDa)

5.6

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01940
fragaria_vesca	FvH4_1g26790
malus_domestica	MD17G1279000.v1.1
prunus_persica	Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1
pyrus_communis	pycom09g19370 pycom17g27660
rosa_chinensis	RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041
rosa_laevigata	RLG00000023039
rosa_multiflora	Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395250
rosa_rugosa	Rorug03G0229200
rosa_samantha	Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300
rosa_wichuraiana	Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	102
AccI	GTMKAC	2 cut(s)	234, 288
AciI	CCGC	4 cut(s)	171, 201, 256, 279
AclWI	GGATC	2 cut(s)	130, 601
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	54
AcyI	GRCGYC	3 cut(s)	5, 252, 312
AfaI	GTAC	2 cut(s)	96, 212
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	51, 386, 431, 548
AhdI	GACNNNNNGTC	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	5 cut(s)	152, 217, 328, 348, 357
AluI	AGCT	5 cut(s)	152, 217, 328, 348, 357
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	12, 452, 493
AlwI	GGATC	2 cut(s)	130, 601
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	481, 578
ApeKI	GCWGC	3 cut(s)	167, 348, 608
ApoI	RAATTY	1 cut(s)	54
AsiGI	ACCGGT	1 cut(s)	105
AspLEI	GCGC	3 cut(s)	143, 167, 418
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	177, 211
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	179, 335, 620
BccI	CCATC	2 cut(s)	269, 492
BceAI	ACGGC	2 cut(s)	116, 325
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	12, 452, 493
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	4 cut(s)	168, 171, 349, 609
BlsI	GCNGC	4 cut(s)	169, 172, 350, 610
Bme1390I	CCNGG	2 cut(s)	22, 189
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	104, 579
BmrFI	CCNGG	2 cut(s)	22, 189
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	4 cut(s)	102, 266, 308, 404
BpuMI	CCSGG	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	125
BsaHI	GRCGYC	3 cut(s)	5, 252, 312
BsaI	GGTCTC	2 cut(s)	452, 493
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 513, 543
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	658
BseXI	GCAGC	3 cut(s)	179, 335, 620
BshFI	GGCC	2 cut(s)	483, 580
BshNI	GGYRCC	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	105
BshVI	ATCGAT	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	21, 106
BslFI	GGGAC	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	12, 452, 493
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	483, 580
Bso31I	GGTCTC	2 cut(s)	452, 493
BsoBI	CYCGRG	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	122, 126, 593
BspACI	CCGC	4 cut(s)	171, 201, 256, 279
BspANI	GGCC	2 cut(s)	483, 580
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	104, 579
BspPI	GGATC	2 cut(s)	130, 601
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	452, 493
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	122, 126, 593
BssNI	GRCGYC	3 cut(s)	5, 252, 312
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	223, 466
BstACI	GRCGYC	3 cut(s)	5, 252, 312
BstAUI	TGTACA	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	3 cut(s)	143, 167, 418
BstKTI	GATC	3 cut(s)	125, 129, 596
BstMAI	GTCTC	3 cut(s)	12, 452, 493
BstMBI	GATC	3 cut(s)	122, 126, 593
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 354
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	20, 187
BstV1I	GCAGC	3 cut(s)	179, 335, 620
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	483, 580
BsuTUI	ATCGAT	1 cut(s)	125
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	462, 480, 651
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	3 cut(s)	143, 167, 418
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	125
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	95, 211
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	2 cut(s)	370, 563
CviQI	GTAC	2 cut(s)	95, 211
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	124, 128, 595
DpnII	GATC	3 cut(s)	122, 126, 593
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	481
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	190, 245
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	2 cut(s)	452, 493
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	373, 566
FaiI	YATR	6 cut(s)	371, 441, 494, 509, 564, 573
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	369, 562
FblI	GTMKAC	2 cut(s)	234, 288
Fnu4HI	GCNGC	4 cut(s)	168, 171, 349, 609
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	168, 171, 349, 609
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	3 cut(s)	142, 166, 417
GluI	GCNGC	4 cut(s)	168, 171, 349, 609
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	483, 580
HapII	CCGG	2 cut(s)	21, 106
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	3 cut(s)	143, 167, 418
Hin1I	GRCGYC	3 cut(s)	5, 252, 312
Hin1II	CATG	2 cut(s)	373, 566
Hin6I	GCGC	3 cut(s)	141, 165, 416
HinP1I	GCGC	3 cut(s)	141, 165, 416
HincII	GTYRAC	3 cut(s)	111, 235, 289
HindII	GTYRAC	3 cut(s)	111, 235, 289
HinfI	GANTC	4 cut(s)	176, 192, 584, 600
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	21, 106
HphI	GGTGA	2 cut(s)	177, 211
Hpy166II	GTNNAC	5 cut(s)	111, 235, 289, 568, 651
Hpy188III	TCNNGA	3 cut(s)	245, 488, 597
Hpy8I	GTNNAC	5 cut(s)	111, 235, 289, 568, 651
Hpy99I	CGWCG	4 cut(s)	236, 290, 293, 317
HpyAV	CCTTC	1 cut(s)	542
HpyCH4III	ACNGT	2 cut(s)	223, 466
HpyCH4IV	ACGT	5 cut(s)	65, 231, 252, 285, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 354
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	5 cut(s)	65, 231, 252, 285, 291
Hsp92I	GRCGYC	3 cut(s)	5, 252, 312
Hsp92II	CATG	2 cut(s)	373, 566
HspAI	GCGC	3 cut(s)	141, 165, 416
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	122, 126, 593
LmnI	GCTCC	2 cut(s)	333, 345
Lsp1109I	GCAGC	3 cut(s)	179, 335, 620
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	5 cut(s)	65, 231, 252, 285, 291
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	124, 128, 595
MboI	GATC	3 cut(s)	122, 126, 593
MboII	GAAGA	3 cut(s)	171, 174, 458
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	2 cut(s)	54, 381
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	3 cut(s)	185, 186, 578
MnlI	CCTC	5 cut(s)	124, 241, 298, 463, 515
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	3 cut(s)	110, 396, 615
MslI	CAYNNNNRTG	2 cut(s)	368, 374
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	21, 106
MspR9I	CCNGG	2 cut(s)	22, 189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	149, 354
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	122, 126, 593
NlaIII	CATG	2 cut(s)	373, 566
NlaIV	GGNNCC	2 cut(s)	104, 579
NspV	TTCGAA	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 297
PfeI	GAWTC	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	4 cut(s)	169, 172, 350, 610
PleI	GAGTC	3 cut(s)	184, 186, 578
PpsI	GAGTC	3 cut(s)	184, 186, 578
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	104, 579
PspPI	GGNCC	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	96, 212
RsaNI	GTAC	2 cut(s)	95, 211
RseI	CAYNNNNRTG	2 cut(s)	368, 374
SacI	GAGCTC	1 cut(s)	219
SalI	GTCGAC	2 cut(s)	233, 287
SaqAI	TTAA	3 cut(s)	110, 396, 615
SatI	GCNGC	4 cut(s)	168, 171, 349, 609
Sau3AI	GATC	3 cut(s)	122, 126, 593
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	3 cut(s)	185, 186, 578
ScrFI	CCNGG	2 cut(s)	22, 189
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	155
SgrDI	CGTCGACG	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	368, 374
SmlI	CTYRAG	4 cut(s)	117, 245, 323, 419
SmoI	CTYRAG	4 cut(s)	117, 245, 323, 419
Sse9I	AATT	2 cut(s)	54, 381
SsiI	CCGC	4 cut(s)	171, 201, 256, 279
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	20, 187
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	223, 466
TaiI	ACGT	5 cut(s)	68, 234, 255, 288, 294
TaqI	TCGA	4 cut(s)	125, 155, 234, 288
TasI	AATT	2 cut(s)	54, 381
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	3 cut(s)	110, 396, 615
Tru9I	TTAA	3 cut(s)	110, 396, 615
TscAI	CASTG	3 cut(s)	469, 480, 658
TseI	GCWGC	3 cut(s)	167, 348, 608
TspDTI	ATGAA	2 cut(s)	386, 459
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	3 cut(s)	469, 480, 658
Tth111I	GACNNNGTC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 373
XmiI	GTMKAC	2 cut(s)	234, 288
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.