Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8152082.1

Orthogroup ID

OG0003568

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 565

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8152082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgcttgtaaaacggtgccgtctaactcctcaaagaagaatctttctttgttccgccaatagagcttcgaacgcaagcgctgccgccgagtcttcttgttcttctccggtactctactcggccaagcaatttgagctcatagttcccaacattgacttggttctcgaggacgtcggcccctatctcatcaacgatggtggaaacgtcgacattgtgtccgtcatagacggcgtcgtttctctcaagctccaaggggcttgtggaagctgtcctagctcaacaaccaccatgaaaatgggaattgaaagagtgcttaaagaaaagtttggagatgcactcaaggatattcaacaagtctttgatgaagaaaacagagagaccacagttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

130

Amino Acids

14.11

Weight (kDa)

5.02

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01940
fragaria_vesca	FvH4_1g26790
malus_domestica	MD17G1279000.v1.1
prunus_persica	Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1 Prupe.3G007000_v2.0.a1
pyrus_communis	pycom09g19370 pycom17g27660
rosa_chinensis	RchiOBHm_Chr1g0346861 RchiOBHm_Chr3g0487011 RchiOBHm_Chr4g0387891 RchiOBHm_Chr5g0059041
rosa_laevigata	RLG00000023039
rosa_multiflora	Rmu_co8152082.1_g000001 Rmu_co8418247.1_g000001 Rmu_sc0000363.1_g000011 Rmu_sc0001873.1_g000007 Rmu_sc0005856.1_g000002 Rmu_sc0009825.1_g000005 Rmu_sc0027023.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395250
rosa_rugosa	Rorug03G0229200
rosa_samantha	Rh1AG179500 Rh2DG406100 Rh3AG278500 Rh3BG314500 Rh3CG312900 Rh3DG309200 Rh5BG396900 Rh5CG420500 Rh5DG137300
rosa_wichuraiana	Rw0G001690 Rw4G018310 Rw5G012200 Rw6G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	54, 84
AcoI	YGGCCR	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	171, 231
AfaI	GTAC	1 cut(s)	111
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	305, 350
AhdI	GACNNNNNGTC	1 cut(s)	214
AluBI	AGCT	5 cut(s)	65, 136, 247, 267, 276
AluI	AGCT	5 cut(s)	65, 136, 247, 267, 276
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	2 cut(s)	120, 175
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	3, 244
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	17, 178
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	227, 323
BsaHI	GRCGYC	2 cut(s)	171, 231
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	122, 177
BshNI	GGYRCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	122, 177
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	54, 84
BspANI	GGCC	2 cut(s)	122, 177
BspLI	GGNNCC	2 cut(s)	17, 178
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	250
BssNI	GRCGYC	2 cut(s)	171, 231
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	15, 385
BstACI	GRCGYC	2 cut(s)	171, 231
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 133, 273
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	122, 177
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	8 cut(s)	65, 122, 136, 177, 247, 257, 267, 276
CviKI_1	RGCY	8 cut(s)	65, 122, 136, 177, 247, 257, 267, 276
CviQI	GTAC	1 cut(s)	110
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	140, 224, 290
FatI	CATG	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	81, 84
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	81, 84
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	122, 177
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	171, 231
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	39, 89
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	176, 209, 236
HpyCH4III	ACNGT	2 cut(s)	15, 385
HpyCH4IV	ACGT	2 cut(s)	171, 204
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 133, 273
HpySE526I	ACGT	2 cut(s)	171, 204
Hsp92I	GRCGYC	2 cut(s)	171, 231
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	1 cut(s)	120
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	171, 204
MboII	GAAGA	4 cut(s)	48, 84, 93, 377
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	128, 300
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	39, 160
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 133, 273
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	17, 178
NmeAIII	GCCGAG	2 cut(s)	98, 112
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	17, 178
PspPI	GGNCC	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	81, 84
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	7 cut(s)	67, 138, 174, 207, 249, 269, 278
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	164, 242, 338
SmoI	CTYRAG	3 cut(s)	164, 242, 338
Sse9I	AATT	2 cut(s)	128, 300
SsiI	CCGC	2 cut(s)	54, 84
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	15, 385
TaiI	ACGT	2 cut(s)	174, 207
TaqI	TCGA	3 cut(s)	68, 165, 207
TasI	AATT	2 cut(s)	128, 300
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	305, 378
TspGWI	ACGGA	1 cut(s)	208
Tth111I	GACNNNGTC	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	3 cut(s)	154, 257, 292
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	273
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.